PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G187900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 285aa    MW: 31589.5 Da    PI: 4.6899
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G187900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.44.6e-26106166158
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                         ++Dg++WrKYGqK+++gs++pr Y+rC+++   gC+++++v++s+ dp+v +itY +eH++
  Seita.8G187900.1.p 106 MEDGFAWRKYGQKNIHGSKHPRLYFRCSYNddnGCRARRQVQQSEADPSVYIITYFDEHTC 166
                         58***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.172101164IPR003657WRKY domain
SuperFamilySSF1182901.23E-23102166IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-25103166IPR003657WRKY domain
SMARTSM007742.4E-36106168IPR003657WRKY domain
PfamPF031061.3E-24107166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MERVSAPGFA ASEILAKGRE SAARLHAMLD QQQLPEISTM PHELQDLVEQ ILHCCDRALA  60
ALNGSMGKKR KPERGGPADL PSTTRSKRLR VSGGERGIRV EKKWTMEDGF AWRKYGQKNI  120
HGSKHPRLYF RCSYNDDNGC RARRQVQQSE ADPSVYIITY FDEHTCCMGT SLMGNDEKVE  180
KFVINFGSAG VMDGELNGSP SSTCDDDGLV VCEKPDLCNS PEELQAAMDH EAAELLEQST  240
PVLEELGMSS PWWQPLGGCL EWEVGQCENL FYIGESIDID SLLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-20106166868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G187900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980734.10.0probable WRKY transcription factor 63
TrEMBLA0A368S9A70.0A0A368S9A7_SETIT; Uncharacterized protein
STRINGSi027574m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-21WRKY DNA-binding protein 70