PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G175900.1.p
Common NameSETIT_026626mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Dof
Protein Properties Length: 303aa    MW: 31570.3 Da    PI: 9.7349
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G175900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof111.34.5e-354099261
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                        +e+ l+cprCdstntkfCyynn s++qPryfCkaCrr Wt+GG+lr vP+Gg++rknk+s
  Seita.8G175900.1.p 40 QEQGLNCPRCDSTNTKFCYYNNNSMTQPRYFCKACRRNWTQGGTLRKVPIGGSSRKNKQS 99
                        68899*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-233798IPR003851Zinc finger, Dof-type
PfamPF027012.8E-324298IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.7394498IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104682IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MVASPPREEA AAARNVKAKQ AWQQQMAASG GGERKPRPQQ EQGLNCPRCD STNTKFCYYN  60
NNSMTQPRYF CKACRRNWTQ GGTLRKVPIG GSSRKNKQSR AGGSSSSSSS APPAPSSTSN  120
DSNKMNLTQQ LMMMPTTTTP MPANFPNVLP TFMSAGSGSF GELPGSDHHS LPFPPLSLPS  180
NPTGTMPSLV GILRGGFPDG GMAALPFLPV PPSFGAMHQH GHGMMGGSSD QQLVGPLQGM  240
DQALKLPLAA ACGSGPQQWP SSAAPEQQVV GGDGRADKNN NNNGGGATGS SSGVEYYWQG  300
SI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G175900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1177930.0EF117793.2 Setaria italica clone GB-SIM-002 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980692.10.0dof zinc finger protein PBF
TrEMBLK3ZJ730.0K3ZJ73_SETIT; Uncharacterized protein
STRINGSi026626m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.15e-34Dof family protein