PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G147600.1.p
Common NameSETIT_026678mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Dof
Protein Properties Length: 296aa    MW: 31067.5 Da    PI: 8.2124
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G147600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1101.2e-344098260
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                        +e+ l+cprC+stntkfCyynn s++qPryfCkaCrr Wt+GG+lrnvPvGg +rknk 
  Seita.8G147600.1.p 40 QEQGLNCPRCNSTNTKFCYYNNNSMTQPRYFCKACRRNWTQGGTLRNVPVGGRSRKNKL 98
                        68899****************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-243797IPR003851Zinc finger, Dof-type
PfamPF027017.3E-324297IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.8784498IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104682IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MVASPPREEA AAARNIKANQ AWQQQVAATG SGERKPRPQQ EQGLNCPRCN STNTKFCYYN  60
NNSMTQPRYF CKACRRNWTQ GGTLRNVPVG GRSRKNKLNR AGGSSSSSTL PAPSSSSNDS  120
KKMNLTQQLS MMPTATAPMP ADFPNVLPTF MSTGGGFELP SSDHHSLPFP PLSPLFNPGT  180
TPSLLDILTG GFLDSGNNRM AAPPLLGTMQ HGHGMVGGSP DPQLVGLLQG VDQALELPMP  240
AAGGGFQQWP SLAAQEQQVV GGDGSADMDD NNNNNNGGGA SGGSSGVEYY WQGSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G147600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1177931e-121EF117793.2 Setaria italica clone GB-SIM-002 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980592.10.0dof zinc finger protein PBF
TrEMBLA0A368S7T60.0A0A368S7T6_SETIT; Uncharacterized protein
STRINGSi026678m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.19e-35Dof family protein