PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.8G116700.2.p | ||||||||
Common Name | SETIT_026440mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 408aa MW: 44731.4 Da PI: 8.7727 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.5 | 7.2e-11 | 21 | 44 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++rtG C++G +CkF+H+ Seita.8G116700.2.p 21 EPDCSYYMRTGMCRFGMTCKFNHP 44 789********************8 PP | |||||||
2 | zf-CCCH | 39.7 | 8.2e-13 | 65 | 90 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ Seita.8G116700.2.p 65 GQPECQYYLKTGTCKFGATCKFHHPR 90 689*********************96 PP | |||||||
3 | zf-CCCH | 36.7 | 6.9e-12 | 112 | 136 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Seita.8G116700.2.p 112 EKECAYYLRTGQCKFGSTCKFHHPQ 136 679********************97 PP | |||||||
4 | zf-CCCH | 39.4 | 1e-12 | 273 | 298 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ Seita.8G116700.2.p 273 DQPECQFYMKTGDCKFGAVCKFHHPR 298 689*********************96 PP | |||||||
5 | zf-CCCH | 37.7 | 3.5e-12 | 318 | 343 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+f++r+G Ck+G++CkF H+ Seita.8G116700.2.p 318 PGEPICSFYSRYGMCKFGPNCKFDHP 343 5799*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.253 | 18 | 46 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-4 | 18 | 45 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-7 | 21 | 44 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 23 | 46 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-4 | 24 | 45 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.77 | 63 | 91 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 63 | 90 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-10 | 65 | 90 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 67 | 92 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-5 | 69 | 91 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.09E-6 | 109 | 138 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.619 | 109 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-5 | 109 | 136 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 112 | 136 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 115 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.53 | 271 | 299 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-5 | 271 | 298 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 273 | 298 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-6 | 274 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 277 | 299 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 316 | 343 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-7 | 317 | 344 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.497 | 317 | 345 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-8 | 319 | 343 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 322 | 342 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MWQMNLGEAV ELGPYPERVG EPDCSYYMRT GMCRFGMTCK FNHPADRKLA VAAARMKGEY 60 PQRSGQPECQ YYLKTGTCKF GATCKFHHPR EKAAMATRVQ LNELGYPFRP NEKECAYYLR 120 TGQCKFGSTC KFHHPQPSTM MVAVRGSGYS PGQSATSPGQ HAYQGAVTSW PLSRSASFIA 180 SPRWPGHSSY AQVIVPPGLV QVPGWSPYTA QIGSSSSDDQ QQTPGAAQYY TGSRQSGTPG 240 MGDQGMFSSY QAGSVPVGLY AVQRENVFPE RPDQPECQFY MKTGDCKFGA VCKFHHPRER 300 IIPTPNCALS SLGLPLRPGE PICSFYSRYG MCKFGPNCKF DHPLGTVMFG HASSPTGEVP 360 TSRRMLAHVP SHPEVSPDSG SGRSRRISHS DSQQIPPGER STEREAS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.8G116700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034178 | 0.0 | BT034178.1 Zea mays full-length cDNA clone ZM_BFc0032H13 mRNA, complete cds. | |||
GenBank | BT060843 | 0.0 | BT060843.1 Zea mays full-length cDNA clone ZM_BFb0059K13 mRNA, complete cds. | |||
GenBank | BT064219 | 0.0 | BT064219.1 Zea mays full-length cDNA clone ZM_BFc0149L04 mRNA, complete cds. | |||
GenBank | BT085745 | 0.0 | BT085745.1 Zea mays full-length cDNA clone ZM_BFc0056E16 mRNA, complete cds. | |||
GenBank | EU956984 | 0.0 | EU956984.1 Zea mays clone 1579587 zinc finger CCCH type domain-containing protein ZFN-like mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004979251.1 | 0.0 | zinc finger CCCH domain-containing protein 63 isoform X1 | ||||
Swissprot | Q2R4J4 | 0.0 | C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | A0A368S6Q6 | 0.0 | A0A368S6Q6_SETIT; Uncharacterized protein | ||||
STRING | Si026440m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-150 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.8G116700.2.p |
Publications ? help Back to Top | |||
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