PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G113400.1.p
Common NameLOC101753209, SETIT_026387mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 436aa    MW: 45016.5 Da    PI: 8.163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G113400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-09266313455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Seita.8G113400.1.p 266 SHSLAERVRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 313
                         8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-17260329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-11260317No hitNo description
PROSITE profilePS5088815.809262312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-17262330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6266313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-11268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAHDGFLGRF HDLAWPVAHH AAVANAGGGG APFVALQVHV QHELMGAGAG ARSGWEHDAA  60
MGSLVPSRSP SPSSLAAAAS GAAAVDTALM EQLASRLGVS VPSSSRYASC YSSPVGSPSK  120
PAPAPFGAPL LGADAARLSC FAASGGKLSR VASSQLLLGE PVTAPAPGTA QQHASDGSSS  180
DSPSRKRKAP GGKSKAKEAA TTATPKSREP ETRAKKCKLS ADTADEERKP AAGEAGSGNG  240
KGKEVAAEPP KDYIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP GCSKVTGKAV  300
MLDEIINYVQ SLQRQVEFLS MKLSTVNPRL EIDVDSFIPK DANQPCAPAA SSLPPPPVYS  360
LEDSSPALCY ASSQGTAAPS AVTSAKSFAT PSTFVNHGIP DHSLEGFHNA NSQMGSLWEE  420
DDLQSLVLMG FRGNT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G113400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370227e-88BT037022.1 Zea mays full-length cDNA clone ZM_BFb0151M19 mRNA, complete cds.
GenBankBT0636607e-88BT063660.1 Zea mays full-length cDNA clone ZM_BFc0091C03 mRNA, complete cds.
GenBankKJ7268667e-88KJ726866.1 Zea mays clone pUT3407 bHLH transcription factor (bHLH141) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703449.10.0transcription factor bHLH62
TrEMBLK3ZII50.0K3ZII5_SETIT; Uncharacterized protein
STRINGSi026387m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.16e-54bHLH family protein