PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Seita.8G105400.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 263aa MW: 28796.9 Da PI: 9.1334

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.8G105400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	73	94	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C+k+Fs+ + L rH +H Seita.8G105400.1.p 73 VCTICNKTFSSYHALGRHKFVH 94 6*****************8777 PP
2	zf-C2H2	11.8	0.00072	120	142	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C++ F ++ +L rHi +H Seita.8G105400.1.p 120 YVCRKCSEKFLTRKSLGRHIHKH 142 9*******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.36E-6	71	142	No hit	No description
SMART	SM00355	0.11	72	94	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.492	72	99	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	9.5E-4	73	98	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	7.3E-6	74	91	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.11	120	142	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.473	120	142	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	122	142	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MDLVEMPMAH AWHQKHGTGT TDLPVSVACS SDAHSSGEKD EMREAAELFT TLVKRVRKET 60 VKEPSPPSVK TPVCTICNKT FSSYHALGRH KFVHNKQKNS LLGDGAGSSS GTGERCALKY 120 VCRKCSEKFL TRKSLGRHIH KHWREIFKMK QPSARRKNLK PPVPLACGTM QSSGPMVLPT 180 DESMQPPVLP TSANPPTPDF DAVQQQQLAN RLGNEIESSC STAPKILNDT GAALPAPKQI 240 SPAVKYAFDL NMFPHETDGW EP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.8G105400.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A368S6B8	0.0	A0A368S6B8_SETIT; Uncharacterized protein
STRING	Pavir.Hb01284.1.p	1e-61	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22369	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	4e-06	salt tolerance zinc finger

Link Out ? help Back to Top
Phytozome	Seita.8G105400.1.p