PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G094400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 749aa    MW: 78207.7 Da    PI: 6.6595
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G094400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00048429451123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C dCg++F ++  L  H + H
  Seita.8G094400.1.p 429 YSCADCGETFYTPQALGGHANGH 451
                         99***********9998887766 PP
2zf-C2H212.50.00044475498123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++Cp C+ +Fs+   L  H ++ H
  Seita.8G094400.1.p 475 HVCPVCDIVFSTGQALGWHRKRvH 498
                         79*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014477.85E-5942No hitNo description
SMARTSM003550.3139162IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245139167IPR007087Zinc finger, C2H2
PROSITE patternPS000280141162IPR007087Zinc finger, C2H2
SuperFamilySSF576679.07E-6427495No hitNo description
SMARTSM003555.1429451IPR015880Zinc finger, C2H2-like
PfamPF139120.033429452IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.325429456IPR007087Zinc finger, C2H2
PROSITE patternPS000280431451IPR007087Zinc finger, C2H2
PfamPF139121.4E-8474499IPR007087Zinc finger, C2H2
SMARTSM003550.052475498IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280477498IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MSPSEEPPPP PPPPPPPPPP KGESMGRRLI VRIRLRTTQL PDQEEGSDVG ANENAAALQS  60
YGSESPRSPH EKLPERPHEG EASRSRGVEP PSEPLAGGHG REEAAVQQHG SPSLCSREAY  120
CLIRDAARAG LGVVAAEPYL CTNCTMTFGR EKKMQGHKRW QHRPRSASSS EEEAPTPKKG  180
ATSRRGRSPI HAAGEDLADP ARSPVMEFRR RGTQVGVGGR EDLVSLRTHQ AGHVFGAHND  240
GHVNQAIVPA AENPEVTVSE STVTAHNVIA IEDDDSDNDN AMNVTGGDAG NANPVIAVMG  300
FGPTASSAPD VAPVLPMARA PAAATEVIVI DDDSSDDDNV VNGTNAAAVL PLPRAPAAPT  360
AADTVKGKNA LNEGGACYSN GGHGKAVAGY SSAGHSKAAA GYSSGGYGYG YGKAIAIGGQ  420
SKRGPRRPYS CADCGETFYT PQALGGHANG HRSKEKKSMV MPNLQSPSAC RSGRHVCPVC  480
DIVFSTGQAL GWHRKRVHYG GLVIGSASNT SSSSTPRPPA NALEPSEATA MNMYSNAAAV  540
HGTANAMRCR SFFPDSAGSA ILALPALNPV QRMAMTSNPA VPGLVSAATA ATGSWSWSLP  600
ATTSSFLPAI PLQNHGENPP EEIAVAPGNR AGRTIRAFSS QDQEENPPQE LAMAPGNGEH  660
RSIRPFGSDT SPQFPSQNQE YPPEERAVAT GNDEQRSICL LGIDVSPALP SQNQEENPPQ  720
EIVPGNRGLG TILLFGVNLA ERPKEPKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G094400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368S7M20.0A0A368S7M2_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1867479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.13e-10zinc-finger protein 3