PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Seita.8G079800.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 173aa MW: 18621.1 Da PI: 5.2413

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.8G079800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.6	1.4e-05	8	35	23	55
HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 L +++P + +K +K++iL +++Y+k+L+ Seita.8G079800.1.p 8 LATMVPDL-----TKTDKISILGSTIQYVKQLE 35 89999999.....9*****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.661	1	34	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-9	6	47	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.23E-7	6	47	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.73E-5	7	39	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MQQQSVALAT MVPDLTKTDK ISILGSTIQY VKQLEEKVKT LEEQNARRTS SESSTVFEGK 60 GHISSTDKQH TSCPRPCLDG SAESVGGDSN SSVEVTIHEN TVLLKICCES RSGVLVMIIS 120 KLESLGLSII NTSVLPFTNT YFSISITAKI GEGFSTTVEL VNNLNMALRD FS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.8G079800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828601.1	8e-78	transcription factor bHLH18-like
TrEMBL	A0A368S5E1	1e-121	A0A368S5E1_SETIT; Uncharacterized protein
STRING	Si027407m	7e-94	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6401	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	4e-22	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.8G079800.1.p