PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G040900.1.p
Common NameLOC101771307, SETIT_026085mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 663aa    MW: 68644.1 Da    PI: 6.5509
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G040900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-093644011954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Seita.8G040900.1.p 364 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 401
                         664459******************************88 PP
2BELL114.26.6e-37224295172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erqelq+kk+kL+++l+eV++rY+qy+ q+q+v +sFea+ag gsa+ Yt+lAl++iSr+FrcL+daia q+
  Seita.8G040900.1.p 224 ERQELQMKKSKLINMLDEVEQRYRQYHGQMQAVSASFEAAAGAGSARTYTALALRTISRQFRCLRDAIAAQV 295
                         79*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-58149293IPR006563POX domain
PfamPF075262.6E-49154292IPR006563POX domain
PROSITE profilePS5007111.969342405IPR001356Homeobox domain
SMARTSM003891.2E-9345409IPR001356Homeobox domain
CDDcd000863.58E-13345406No hitNo description
SuperFamilySSF466893.94E-17347411IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-29348411IPR009057Homeodomain-like
PfamPF059202.6E-18362401IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MAAYYHGGAG TDIQASTDGL QTLYLMNPSY TAGYADAGAS PPGPANMMLL NSAVSTMTPA  60
SFGHHQQSPS AAQQHFVGIP LQAPPAGYNL WAPATSGAAD MSPPQAQTPG AAGVSAVLSL  120
SSREAPPVTV AAVGGADEGK YHLVGASATS QGQMVMSSKY LKAAQELLDE VVSVSKGVEE  180
AKAATKSLSA VKKKEDSEGV SGGGTEDGGG AKSGSAAPEL STAERQELQM KKSKLINMLD  240
EVEQRYRQYH GQMQAVSASF EAAAGAGSAR TYTALALRTI SRQFRCLRDA IAAQVRAASR  300
ALGEDADAAV AAGGRTVGSR LRYIDHQLRQ QRALQQLGMM QGGAWRPQRG LPERSVSILR  360
AWLFEHFLHP YPKDSDKIML AKQTGLTRSQ VSNWFINARV RLWKPMVEEM YLEETKDQDG  420
GNDEGKSGGG TKSGDTSNGV DGVTPRADGG SGAAMSKAAG RVGAEGASSA KGVGGGVHGS  480
TLLELAGDQH TAHPGFYEDE GDDADDVERR LKKARGDEPG APFHSHHVHD MAALHAQAAA  540
AARQQHEEVS HRELLMKFME SGGGGAGARD QHHQDGGGYS LFAPGPYGQF GSEPFAFAGN  600
GGVSLTLGLP HGAGGGAEQT ASFLMGSSAG GDGGSHGGAG GYDMNMQSTK SFAAQLMRDF  660
VA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-17351409563Homeobox protein Meis2
4xrm_B3e-17351409563Homeobox protein Meis2
5bng_A2e-17351409159Homeobox protein Meis2
5bng_B2e-17351409159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G040900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0860920.0BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978738.10.0BEL1-like homeodomain protein 1
RefseqXP_004978743.10.0BEL1-like homeodomain protein 1
RefseqXP_004978744.10.0BEL1-like homeodomain protein 1
RefseqXP_012703953.10.0BEL1-like homeodomain protein 1
RefseqXP_022684940.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-108BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLK3ZHN10.0K3ZHN1_SETIT; Uncharacterized protein
STRINGSi026085m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.12e-67BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]