 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Seita.8G039500.2.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
| Family | NAC | ||||||||
| Protein Properties | Length: 1787aa MW: 200974 Da PI: 6.5582 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 121.2 | 9e-38 | 1040 | 1172 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyW 83
lppG+rF Pt+eel+++yL+++++g+ ++e++i+ vdiy+++P++L++ + + ++++w+fF++ ++++ +g r+ r+t sgyW
Seita.8G039500.2.p 1040 LPPGYRFYPTEEELLSFYLRHRLAGTMPQVEHFIPVVDIYRYHPSELQAmagvA--NvgDKEQWFFFCPWAERELHGGRPARTTPSGYW 1126
79****************************999**************9535532..1335669************************** PP
NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
ka v+s+ ++++g k+t+vfy+grap g+kt+W m+ey++
Seita.8G039500.2.p 1127 KAAAVASYVYSApANRVIGEKRTMVFYEGRAPMGKKTRWKMNEYKA 1172
**********9988899***************************85 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd14798 | 7.35E-18 | 4 | 132 | No hit | No description |
| SuperFamily | SSF52540 | 4.64E-53 | 155 | 431 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 3.8E-49 | 189 | 457 | IPR002182 | NB-ARC |
| Gene3D | G3DSA:3.40.50.300 | 9.9E-17 | 189 | 314 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SMART | SM00382 | 0.031 | 193 | 331 | IPR003593 | AAA+ ATPase domain |
| PRINTS | PR00364 | 5.8E-13 | 196 | 211 | No hit | No description |
| PRINTS | PR00364 | 5.8E-13 | 273 | 287 | No hit | No description |
| PRINTS | PR00364 | 5.8E-13 | 366 | 380 | No hit | No description |
| SuperFamily | SSF52047 | 2.59E-23 | 552 | 728 | No hit | No description |
| Gene3D | G3DSA:3.80.10.10 | 2.9E-14 | 554 | 741 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| PRINTS | PR00364 | 5.8E-13 | 620 | 636 | No hit | No description |
| SuperFamily | SSF52047 | 2.59E-23 | 787 | 878 | No hit | No description |
| Gene3D | G3DSA:3.80.10.10 | 2.9E-14 | 788 | 882 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF101941 | 6.41E-42 | 1036 | 1199 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 45.451 | 1040 | 1200 | IPR003441 | NAC domain |
| Pfam | PF02365 | 1.2E-19 | 1041 | 1171 | IPR003441 | NAC domain |
| CDD | cd14798 | 3.44E-10 | 1286 | 1390 | No hit | No description |
| SuperFamily | SSF52540 | 1.85E-50 | 1440 | 1710 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 3.8E-46 | 1458 | 1737 | IPR002182 | NB-ARC |
| Gene3D | G3DSA:3.40.50.300 | 3.0E-17 | 1460 | 1595 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SMART | SM00382 | 0.0044 | 1473 | 1636 | IPR003593 | AAA+ ATPase domain |
| CDD | cd00009 | 0.00178 | 1477 | 1563 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1787 aa Download sequence Send to blast |
MDLAAGAIGS LLPKLVELLK LEYGLYYDTR KAIESLLREL ESAYAVLREI GDVPPYELDV 60 DELVRLWARD VREASYDMED ALDALFLVPI GGPEPTETSL HEKVGKLFQK SKARRNLSTQ 120 IHDINEKVDK LAAKRDRYGL DIFVAKPVGA TSIDPRNATR YIRATDLVGI EGPRDELISM 180 LSVGGDVDMS NKKIKIVSVT GSGGLGKTTL AKAVYDQLKP GFDCGAFIPL GRNPDMMKVF 240 KDILINLDKK RYANYSDLNV LDVKKLMEKL KEFVEKKRCF IIIDDIWDIQ SWKLIKCALQ 300 DSDCRSRVVI TTRIFGVATY ADDVYDMQPL SPEKSEKLFY ARMFAGDGKH LDRPSAETCE 360 LFLKKCCGLP LAIITIASLL ANKPEEEWSE VYYSFGFGNT DNYDDVENAR RILSFSYYDL 420 PSRLKACLLY LSTFSENHMI EKNSLIWMWI AEGFIHAEPG VGLFELGERY FNELINRGLI 480 QAEETEYEGY VDACSVNIMV LDLIRSLSTD ENFSTVLDGR EQQKLPRSIA RRLLLKCFER 540 HNSSQLTTNV DVSKVRSLFA SQCDFGASFP RFPCLRVLDM INCRAEEGRE EGMLDHLWSL 600 LQLRYLGLGL GLIELPRKVR YLKFLQTLDL RGSFVKELPN GVGLLTQLVC LRSDCETRVP 660 AGLIGKLTSL QELAIHPTAN ARMHFVKELG LLRELRVLRT MIDGTSESMG RTLLESIGNL 720 HKIRYLNIEE AHPSLPSSFG SSPIPSTLLF SSPSPSSPMA KTLREAQREL AFSLLGNCRM 780 TDAGFVTCQH LRFLRLEWIV FSGLPGWINS SLAPNLSYLC LKVLVMKEQD VETLARLPEL 840 RCLKLHSCDT KLLVIKILTE NVGYFRNLRT LHLYNTSIWF DPHGSKCRSS SRIESTIMPS 900 LESLSFDVHV RFLKDATTLF GFDKLLGFEN IGRSSLQIVT AYVNCGNARA SEVEEVEAAL 960 VHAATVHPKH PTLQTARLEE DDLLSPYQEV TSPVTKLVDQ VKSMEVSAAP SLHQTNVDEE 1020 PGESSTDRTM GSGSSSDPPL PPGYRFYPTE EELLSFYLRH RLAGTMPQVE HFIPVVDIYR 1080 YHPSELQAMA GVANVGDKEQ WFFFCPWAER ELHGGRPART TPSGYWKAAA VASYVYSAPA 1140 NRVIGEKRTM VFYEGRAPMG KKTRWKMNEY KAADGAPLLL AAGAPVRLRN EFRVCRVYIS 1200 TGTLKSFDCR PLNPAGGVDQ ALHCYQQQQV QLAPPPPPAA AAAASQMPAV DGVDQALNVS 1260 EEHGESSTEG MTNSTQGTME APVSSSLGAM GSLFRKLGIL LDPKYPLRSS LKHAIKLLVE 1320 DLEEIRDAHM EQLMADSHNS KAKYWMEEVR ELSYDIEDSI DFMMLSHNAA NEKPRSIHAP 1380 KLRVARLKIR GLPSMLKLST RIVRVAELRT LLWEASERHA RYQLDGCVSN PRSVFSGRSS 1440 RITLVYKVVA DHIGIEGPKK ELTMWLTNQA EQQLKVLCIF GPAGIGKTTL AKELYRELGG 1500 KFDCRAFIRV SRNPDISRLL QELLYQILRP NKQNLYACSV QGDIENIRKH LEDKRYFIVI 1560 DDLWEAEAWD IIKNAFPNGS NCSRVIITCE VKNIAPECSG YHTVDTFEMK PLGSQDSENL 1620 FLDRAFSSDN QFPDPFIFRM LKECGGLPLA IISAAGLFAS LRDNSDIWHQ LLQSVLSTLE 1680 NLSLEDMLKQ IVSICYNNLP QELKTCLLYL TMYPVGCTIW KDDLLKQWAA EGFITTTKGN 1740 EGVAENYFNE LVKRGMIQPE KINYNNEPVD CPYTTVAPSM QPNRKV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j5t_C | 9e-48 | 3 | 1771 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 9e-48 | 3 | 1771 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 9e-48 | 3 | 1771 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 9e-48 | 3 | 1771 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 9e-48 | 3 | 1771 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 9e-48 | 3 | 1771 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 9e-48 | 3 | 1771 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 9e-48 | 3 | 1771 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 9e-48 | 3 | 1771 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 9e-48 | 3 | 1771 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 9e-48 | 3 | 1771 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 9e-48 | 3 | 1771 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 9e-48 | 3 | 1771 | 1 | 718 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Seita.8G039500.2.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004978729.2 | 0.0 | LOW QUALITY PROTEIN: uncharacterized protein LOC101767946 | ||||
| TrEMBL | A0A368S444 | 0.0 | A0A368S444_SETIT; Uncharacterized protein | ||||
| STRING | Si025895m | 0.0 | (Setaria italica) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G22380.1 | 2e-49 | NAC domain containing protein 90 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Seita.8G039500.2.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|