PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.8G036300.1.p | ||||||||
Common Name | SETIT_026452mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 404aa MW: 42267.1 Da PI: 7.4567 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.4 | 8.7e-10 | 127 | 189 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 eke kr rr NRe+Ar +R++a +eL++kv L+++N+ +kke ++ +e+ +lk + Seita.8G036300.1.p 127 EKEAKRLRRVLANRESARQTILRRQAIRDELARKVVDLSSQNENMKKEKDMVMQEYLSLKEAN 189 89**********************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00170 | 4.5E-8 | 127 | 190 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 1.9E-11 | 127 | 191 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.864 | 129 | 192 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.93E-6 | 131 | 187 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-4 | 131 | 187 | No hit | No description |
CDD | cd14702 | 1.49E-13 | 132 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 404 aa Download sequence Send to blast |
MSDDSDGQRQ CRRGVTVDVE LDAAMALADM AGVGPAATPG GGNHPRSSHQ AAAAAPPTAE 60 GEDDLASTRL SLELGKVGIQ SASPCSSSSS AGHPHPQPSA QHQPHPVPEA AATGYGPRPR 120 HTLTEAEKEA KRLRRVLANR ESARQTILRR QAIRDELARK VVDLSSQNEN MKKEKDMVMQ 180 EYLSLKEANK QLKEQVARTT KKAPVTTAVT AAVPMHVAAV QQQAAEPMAA AAASPPATPP 240 QPGFLYTAAP PVPYVWGSWP PGAGYEHHHH HGSPPPALCL PPCAWYYPVV ADPRGSPSAA 300 YAGTQQQQQQ AAFQPEPAGS GGGSPAGGAT AEEDTDDDPC SLTLGLDIAA DKRSAPVSID 360 ARGGAGPSDR DKAATAAEAR KRRKELTKLK HMHAAGRPGA EQW* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 379 | 384 | RKRRKE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.8G036300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU958502 | 1e-115 | EU958502.1 Zea mays clone 1697405 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828038.1 | 1e-147 | uncharacterized protein LOC112903047 | ||||
TrEMBL | K3ZIQ0 | 0.0 | K3ZIQ0_SETIT; Uncharacterized protein | ||||
STRING | Si026452m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3165 | 34 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19490.1 | 2e-17 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.8G036300.1.p |