PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G036100.1.p
Common NameLOC101760368, SETIT_026707mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 295aa    MW: 32001.8 Da    PI: 6.5138
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G036100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.22.2e-42171491128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyWka 85 
                         lppG+rF Pt+eel+++yL+++++g++ ++e++i+ vdiy+++P++L++    +  +  ++++w+fF++r++++ +g r+ r+t sgyWka
  Seita.8G036100.1.p  17 LPPGYRFYPTEEELLSFYLRHRLAGTRPQVEHFIPVVDIYSYHPSELQAmagvA--NvgDKEQWFFFCPRAERELHGGRPARTTPSGYWKA 105
                         79****************************999**************9535532..1335669**************************** PP

                 NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         tg+   v+s+  ++++g k+t+vfy+grap+g+kt+W m+ey++
  Seita.8G036100.1.p 106 TGSPSYVYSApANRVIGEKRTMVFYEGRAPTGNKTRWKMNEYKA 149
                         *********988899***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-4712184IPR003441NAC domain
PROSITE profilePS5100547.64817185IPR003441NAC domain
PfamPF023652.7E-2218148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MLLQRTMGSG SSSDPPLPPG YRFYPTEEEL LSFYLRHRLA GTRPQVEHFI PVVDIYSYHP  60
SELQAMAGVA NVGDKEQWFF FCPRAERELH GGRPARTTPS GYWKATGSPS YVYSAPANRV  120
IGEKRTMVFY EGRAPTGNKT RWKMNEYKAA ADDCIATAYG APPPLAAGAP VRLRNEFSVC  180
RVYISTGTLR SFDRRPLNPA GGVDQALHCY QQQQVLAPPA AAAAAASQMP AVGVVANGQA  240
AENSHDSTSS ESRGVVVDGA EEDSGATAID WESLADLRFS VVDDLSRVIN WPSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-271718317163NO APICAL MERISTEM PROTEIN
1ut4_B3e-271718317163NO APICAL MERISTEM PROTEIN
1ut7_A3e-271718317163NO APICAL MERISTEM PROTEIN
1ut7_B3e-271718317163NO APICAL MERISTEM PROTEIN
3swm_A3e-271718320166NAC domain-containing protein 19
3swm_B3e-271718320166NAC domain-containing protein 19
3swm_C3e-271718320166NAC domain-containing protein 19
3swm_D3e-271718320166NAC domain-containing protein 19
3swp_A3e-271718320166NAC domain-containing protein 19
3swp_B3e-271718320166NAC domain-containing protein 19
3swp_C3e-271718320166NAC domain-containing protein 19
3swp_D3e-271718320166NAC domain-containing protein 19
4dul_A3e-271718317163NAC domain-containing protein 19
4dul_B3e-271718317163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G036100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978711.10.0NAC domain-containing protein 90
SwissprotQ9FMR31e-63NAC90_ARATH; NAC domain-containing protein 90
TrEMBLK3ZJF40.0K3ZJF4_SETIT; Uncharacterized protein
STRINGSi026707m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.26e-65NAC domain containing protein 61
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]