 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Seita.8G026600.1.p |
Common Name | SETIT_028262mg |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
GRAS |
Protein Properties |
Length: 490aa MW: 53144.6 Da PI: 6.8163 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.8G026600.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 285.8 | 1.2e-87 | 19 | 463 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPil 91
++L ecA v++g++e+a + L+r l a+ dg p+ Rla ++ La+rl r +v+ +++al +++ + + aa++ f+e+sP++
Seita.8G026600.1.p 19 RALCECAADVEAGSMEKAARWLSRATGLaAATDGGPLPRLAVPVADCLARRLIRpMVPAVADALIDPSDH-LDRRCVRAARRSFFELSPFP 108
689*********************9999678888********************8999999988444443.345555678999******** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
k + +aN+ Ilea+e+e+ vH+iDf + q+ QW+ Ll+ + s peg+p+lR+T v++ ++e l ++ e L + A++l+vp++ +
Seita.8G026600.1.p 109 KAAVAVANRVILEAMENEKNVHVIDFAgpAAQPCQWIQLLRDFRSLPEGAPHLRLTIVHD----DEEFLAKVSESLVDEADRLDVPLQVHC 195
**************************75589*****************************....9************************** PP
GRAS 181 lvakrledleleeL....rvkpgEalaVnlvlqlhrll..................................................... 214
va ++e+l++++L +k+gEa a+ + l+lhrll
Seita.8G026600.1.p 196 -VAGQIETLDFSDLhgvlGLKSGEARAIVCTLRLHRLLaaadeaassfsaghrsnqtasvarlqqmasnscplsigggaaceeeeedpyyr 285
.7999******99966667889********************************************************************* PP
GRAS 215 ..............desvsleserdevLklvks.lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvEr 287
+ +++ + +L++ + +sPk+vv++eqea+hn+ sF +rf+eal++y+a++dsl+a +++ er+ vEr
Seita.8G026600.1.p 286 spatplgfvsppltTPPFQMPPALAGFLSAARAtVSPKIVVLAEQEASHNGVSFRKRFAEALHHYAAVYDSLDAAAAAYRrppAERAEVER 376
************99666777777778*****9538*************************************877665555779******* PP
GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
++l++ei++++ ga+rrerh +l++W r+e aGF+ vpls+ a q + +lr++++ g + e+ g+l+l+Wk+ pL+svSaWr
Seita.8G026600.1.p 377 AVLSEEIRDLLLRDGARRRERHDRLHQWALRMEVAGFRGVPLSYIALRQGDDVLRRCGVGGCESREHGGCLLLCWKSWPLYSVSAWR 463
**************************************************************************************8 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 490 aa
Download sequence Send
to blast |
MRPPPAENGP DRRLAHLGRA LCECAADVEA GSMEKAARWL SRATGLAAAT DGGPLPRLAV 60 PVADCLARRL IRPMVPAVAD ALIDPSDHLD RRCVRAARRS FFELSPFPKA AVAVANRVIL 120 EAMENEKNVH VIDFAGPAAQ PCQWIQLLRD FRSLPEGAPH LRLTIVHDDE EFLAKVSESL 180 VDEADRLDVP LQVHCVAGQI ETLDFSDLHG VLGLKSGEAR AIVCTLRLHR LLAAADEAAS 240 SFSAGHRSNQ TASVARLQQM ASNSCPLSIG GGAACEEEEE DPYYRSPATP LGFVSPPLTT 300 PPFQMPPALA GFLSAARATV SPKIVVLAEQ EASHNGVSFR KRFAEALHHY AAVYDSLDAA 360 AAAYRRPPAE RAEVERAVLS EEIRDLLLRD GARRRERHDR LHQWALRMEV AGFRGVPLSY 420 IALRQGDDVL RRCGVGGCES REHGGCLLLC WKSWPLYSVS AWRPDRGAAY GIGCDYLSLS 480 APPGPVHSF*
|