PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB

Protein Properties

Length: 320aa MW: 35166.8 Da PI: 7.3697

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.8G006900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl Seita.8G006900.1.p 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	47.5	4.2e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++v++ +lG++ W++Ia++++ Rt++++k++w+++l Seita.8G006900.1.p 67 RGNFTPHEEGIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.042	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	3.27E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	9.40E-12	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.7E-24	65	117	IPR009057	Homeodomain-like
SMART	SM00717	5.4E-13	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.74	66	116	IPR017930	Myb domain
Pfam	PF00249	5.7E-13	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	5.69E-9	69	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PINTGLMRCS KSCRLRWTNY 60 LRPGIRRGNF TPHEEGIIVH LQSLLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKHQ 120 AIGAIFAPPP PSESSSIVPT TAGASHHVDL HHDIIGSKDY NYARPAACSN PDEVTQLIAR 180 RSPFAATDGD SSSSSYASSM DNISKLLNGF MKSSPPPQND ATADIKPSAT DINPLLSFNH 240 MSGGSNTLPP FSDMLPSPPP PQQPALTMGH RGYDNEPKQQ HHQQGPLSPI EKWLFEEAAE 300 QVVDLMDLSD ACCSVPMMF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-25	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	3e-25	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	3e-25	14	116	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.8G006900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728308	1e-154	KJ728308.1 Zea mays clone pUT6588 MYB transcription factor (MYB69) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978476.1	0.0	transcription factor MYB30
Swissprot	B3VTV7	2e-93	MYB60_VITVI; Transcription factor MYB60
TrEMBL	K3ZJ98	0.0	K3ZJ98_SETIT; Uncharacterized protein
STRING	Si026651m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	7e-83	myb domain protein 60

Link Out ? help Back to Top
Phytozome	Seita.8G006900.1.p
Entrez Gene	101769036

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]