PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G332400.1.p
Common NameSETIT_010669mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Dof
Protein Properties Length: 309aa    MW: 32343.2 Da    PI: 8.0531
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G332400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.52.6e-3753112261
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                         +e+al+cprC+stntkfCyynnys++qPry+CkaCrryWtkGG+lrnvPvGg +rknk++
  Seita.7G332400.1.p  53 QEQALNCPRCHSTNTKFCYYNNYSVTQPRYLCKACRRYWTKGGTLRNVPVGGRCRKNKQQ 112
                         7899******************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2551111IPR003851Zinc finger, Dof-type
PfamPF027011.2E-3255111IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.19257111IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105995IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDKIFNTTCN TTMPSTLQNQ QEEAAIPPPA AARNVKKAKQ QQAGGERMPR PQQEQALNCP  60
RCHSTNTKFC YYNNYSVTQP RYLCKACRRY WTKGGTLRNV PVGGRCRKNK QQNPSAPSAL  120
ASSSDSKKIM NSSTQQLLMM MPPPPPPTAA NLSNVLPTTF MSATGVGGGF ELPSSDHHPL  180
PFAPLSLPSN PGTTPPASSF LDLLPFLPTP SSFGAMMLQH GPGMIAGAGG GLQQQWLPSS  240
QHGNDDGGLF AAGGSPAAAA VQEPQQQQEE EVGGGDGGTA ADAAGNDDMG GGGASADIIN  300
IYWSSSRI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G332400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1177935e-57EF117793.2 Setaria italica clone GB-SIM-002 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684319.10.0dof zinc finger protein PBF-like
TrEMBLK3Y8X70.0K3Y8X7_SETIT; Uncharacterized protein
STRINGSi010669m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.12e-35Dof family protein