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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G320700.1.p | ||||||||
Common Name | LOC101765490, SETIT_009752mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 555aa MW: 63123.1 Da PI: 7.9448 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.6 | 3.3e-09 | 340 | 381 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e++ + v++ G+g Wk a ++g +++ ++k+ w+ Seita.7G320700.1.p 340 KWTPEEYEIIRRFVEKNGTG-WKELATELG--KSEIHVKDTWRRM 381 8*******************.********8..9*******99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.4E-6 | 264 | 335 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-6 | 265 | 325 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.32 | 267 | 333 | IPR017877 | Myb-like domain |
CDD | cd00167 | 0.00437 | 267 | 333 | No hit | No description |
PROSITE profile | PS51294 | 10.234 | 335 | 386 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0084 | 337 | 384 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.4E-8 | 339 | 399 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-9 | 340 | 392 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00222 | 340 | 382 | No hit | No description |
Pfam | PF13921 | 2.4E-10 | 341 | 399 | No hit | No description |
PROSITE profile | PS50090 | 8.037 | 383 | 451 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.015 | 387 | 453 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-8 | 393 | 436 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.0E-7 | 431 | 509 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-5 | 437 | 504 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.561 | 453 | 506 | IPR017877 | Myb-like domain |
SMART | SM00717 | 15 | 457 | 508 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MERVSAAEKV VIGSKGEKKG HRSKKDKGKR KGKKDKAQGH GGDGDGSIQS DDMNHSVEIE 60 QAEVLAEMAE KPCLEHAEDI MSKSDVKEDR KKKKKDKEAD TISQKQILDA SDVSVGSGYV 120 ERNMGKGEHD SMSKKGKRKH RDGETSLNGS CDDQIVSRGD KKKKRNERSI TLEEGNEADM 180 SMMGQKTKGK KKRGNERDNV GVDLSQNIPA GNGNSCNKEK KVNVAHGKDK GKRVSFTDDV 240 EVFKIDGGGG DEEGDGSGDS ELVHGQRFTH EEDVKLMEAI QKYSEINQLG DKGLEMIREC 300 KKYPETRGCW AEIAKSLPHR PVMAVYKRAR ILLYRSDERK WTPEEYEIIR RFVEKNGTGW 360 KELATELGKS EIHVKDTWRR MKPKNLKKGT WTQDEYQNLF DLVNLDLRVK AHQKIAPTHR 420 QLRDNISWEA ISEKLTTRNN KDCCLKWYQQ LASPLVKEGI WADIDDYLLM EALQKGDAVC 480 FEDVDWERLL DHRSGELCRQ RWNQMVRMIG GHREKPFIEQ VEVLARRYCP EMLDYRKPEA 540 SDLSPDELAG ESDS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 94 | DRKKKKK |
2 | 89 | 95 | RKKKKKD |
3 | 89 | 96 | RKKKKKDK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G320700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977530.1 | 0.0 | DNA-binding protein REB1 isoform X1 | ||||
Refseq | XP_004977531.1 | 0.0 | DNA-binding protein REB1 isoform X1 | ||||
TrEMBL | K3Y6B1 | 0.0 | K3Y6B1_SETIT; Uncharacterized protein | ||||
STRING | Si009752m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5405 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 3e-96 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G320700.1.p |
Entrez Gene | 101765490 |