PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G317100.1.p
Common NameSETIT_012188mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 488aa    MW: 52746.8 Da    PI: 6.1977
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G317100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS288.51.8e-88184613374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalklfsevsPi 90 
                         ++L ecA  v++g++e+a ++L r   la+++g  p+ Rl+  ++  La+rl r +v+++++al  ps+    +   + aa++ f+e+sP+
  Seita.7G317100.1.p  18 RALCECAADVEAGSMEKAARCLLRATGLAASTGdGPLPRLVVPVADCLARRLIRpMVPGVADALiDPSDHL--DRRCVRAAHRSFFELSPF 106
                         689*******************9999998888857*******************99*****9994444443..44555578899******* PP

                GRAS  91 lkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                         +k +  +aN+ Ilea+e+e+ vH+iDf   + q+ QW+ Ll+ + sRpeg+p+lR+  v++    + e l ++ e L++ A+el+vp++ +
  Seita.7G317100.1.p 107 PKAAVAVANRVILEAMENEKNVHVIDFAgpAAQPCQWIQLLRDFRSRPEGAPHLRLSIVHD----DDEFLANVSESLTDEADELDVPLQVH 193
                         ***************************75589*****************************....99************************ PP

                GRAS 180 vlvakrledleleeL....rvkpgEalaVnlvlqlhrll.................................................... 214
                           va ++e+l++++L     +k+gEa a+ + l+lhrll                                                    
  Seita.7G317100.1.p 194 C-VAAQIETLDFNDLhgvlGLKSGEARAIICTLRLHRLLaaaddaassfsaghrfnqtasvarlqemssdscppsigggaaceeddpyyrs 283
                         *.7999*******9966667889******************************************************************** PP

                GRAS 215 .............desvsleserdevLklvks.lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres....eerikvEr 287
                                        + +++ +   +L++ +  +sPk+vv++eqea+hn+ sF +rf+eal++y+a +dsl+a +++       er+ vEr
  Seita.7G317100.1.p 284 patplgfvsppltTPPFQMPPALAGFLSAARAtVSPKIVVLAEQEASHNGVSFRKRFAEALQHYAAAYDSLDAAAAAYRrpaaAERAEVER 374
                         ***********99666777777778*****9538*************************************8776554445679******* PP

                GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         ++lg+ei++v+  ega+rrerh +l++W  r+e aGF+ vpls+ a  q + +lr++++ g +  e+ g+l+l+W++ pL+svSaWr
  Seita.7G317100.1.p 375 AVLGEEIRDVLLREGARRRERHDRLHQWALRMEVAGFRGVPLSYIALRQGDDVLRRCGVGGCESREHGGCLLLCWRSWPLYSVSAWR 461
                         **************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.1111441IPR005202Transcription factor GRAS
PfamPF035146.1E-8618461IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MHPPTENGPD SRLAHLGRAL CECAADVEAG SMEKAARCLL RATGLAASTG DGPLPRLVVP  60
VADCLARRLI RPMVPGVADA LIDPSDHLDR RCVRAAHRSF FELSPFPKAA VAVANRVILE  120
AMENEKNVHV IDFAGPAAQP CQWIQLLRDF RSRPEGAPHL RLSIVHDDDE FLANVSESLT  180
DEADELDVPL QVHCVAAQIE TLDFNDLHGV LGLKSGEARA IICTLRLHRL LAAADDAASS  240
FSAGHRFNQT ASVARLQEMS SDSCPPSIGG GAACEEDDPY YRSPATPLGF VSPPLTTPPF  300
QMPPALAGFL SAARATVSPK IVVLAEQEAS HNGVSFRKRF AEALQHYAAA YDSLDAAAAA  360
YRRPAAAERA EVERAVLGEE IRDVLLREGA RRRERHDRLH QWALRMEVAG FRGVPLSYIA  420
LRQGDDVLRR CGVGGCESRE HGGCLLLCWR SWPLYSVSAW RPDRDAAYGI GCDSVSTAST  480
AGSCTWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-152246225380Protein SCARECROW
5b3h_A2e-152246224379Protein SCARECROW
5b3h_D2e-152246224379Protein SCARECROW
5hyz_A3e-15316461231375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G317100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684316.10.0scarecrow-like protein 3
TrEMBLK3YD850.0K3YD85_SETIT; Uncharacterized protein
STRINGSi012188m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.15e-61scarecrow-like 3