PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Seita.7G317000.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRAS

Protein Properties

Length: 457aa MW: 51330 Da PI: 7.1188

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G317000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	295.2	1.7e-90	21	436	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl.fsevsPilk 92 +L++cA++v +g++e+++ L++++ l s ++ p+qRl ++ La+rl+ ++ + al +ps+ e ++ l+ ++ f ++sP++ Seita.7G317000.1.p 21 VLYACATHVIEGSFEKTDIDLSQIKRLTSIADGPLQRLSLIIADSLARRLLCPIQGFAGALiHPSDYFE---QSILQTARFnFTNLSPYIS 108 699***********************************************88888887745555553...3333333445***** PP GRAS 93 fshltaNqaIleavegeervHiiDfdi..sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181 ++ t N+aIlea+e e+ v iiD++ s++ QW+ Ll+ + R++gpp++R+T+v++ +++ l +++ L+k Ae l++pf+fn Seita.7G317000.1.p 109 TGFATINRAILEAMEDEQVVRIIDLSCstSHPRQWLKLLRDFHGRQGGPPEVRLTVVHD----DNDFLANMRALLSKEAEMLKIPFQFNS- 194 *********************86226899**********************....9**********************. PP GRAS 182 vakrledleleeL....rvkpgEalaVnlvlqlhrll..........................................desvsleserde 226 v rle+l++++L ++k gEa+a++++lq+hrll + + ++++ + Seita.7G317000.1.p 195 VIGRLETLDFSNLrntlDIKYGEAIAISCSLQMHRLLvvddvscsgigqlqkmaniaqlkqmsssvyspastlnypqtpSPQCQTPKLLVN 285 799999999988854447777***************************************************998555556666778 PP GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl...preseerikvErellgreivnvvacegaerrerhetlek 314 +L++v l+P+++ ++eq+a+hn+ F +rf+eal+yy+alfds++a + pr s+er+ vEr++lg+ei+n++ ceg +r erhe+l++ Seita.7G317000.1.p 286 FLNAVCVLKPNIMLMMEQDANHNALLFCDRFVEALNYYAALFDSFHAVIaanPRRSDERARVERMILGEEIKNILVCEGVHRYERHERLSQ 376 ****************************************977642227788******************************* PP GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 W + ++++GF vpls +a + + l ++ +g + + es++l+l+W + L+s+SaWr Seita.7G317000.1.p 377 WAMHMNRSGFDHVPLSFHAIWEGNQKLMSFGLNGCQSKVESDCLLLCWGSTHLYSISAWR 436 *********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.044	1	416	IPR005202	Transcription factor GRAS
PROSITE profile	PS51257	5	1	25	No hit	No description
Pfam	PF03514	5.9E-88	21	436	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MYRPLLQDQG IADHLAQLGP VLYACATHVI EGSFEKTDID LSQIKRLTSI ADGPLQRLSL 60 IIADSLARRL LCPIQGFAGA LIHPSDYFEQ SILQTARFNF TNLSPYISTG FATINRAILE 120 AMEDEQVVRI IDLSCSTSHP RQWLKLLRDF HGRQGGPPEV RLTVVHDDND FLANMRALLS 180 KEAEMLKIPF QFNSVIGRLE TLDFSNLRNT LDIKYGEAIA ISCSLQMHRL LVVDDVSCSG 240 IGQLQKMANI AQLKQMSSSV YSPASTLNYP QTPSPQCQTP KLLVNFLNAV CVLKPNIMLM 300 MEQDANHNAL LFCDRFVEAL NYYAALFDSF HAVIAANPRR SDERARVERM ILGEEIKNIL 360 VCEGVHRYER HERLSQWAMH MNRSGFDHVP LSFHAIWEGN QKLMSFGLNG CQSKVESDCL 420 LLCWGSTHLY SISAWRPHKG STSGSREHML VSHSAK*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MYRPLLQDQG IADHLAQLGP VLYACATHVI EGSFEKTDID LSQIKRLTSI ADGPLQRLSL  60
IIADSLARRL LCPIQGFAGA LIHPSDYFEQ SILQTARFNF TNLSPYISTG FATINRAILE  120
AMEDEQVVRI IDLSCSTSHP RQWLKLLRDF HGRQGGPPEV RLTVVHDDND FLANMRALLS  180
KEAEMLKIPF QFNSVIGRLE TLDFSNLRNT LDIKYGEAIA ISCSLQMHRL LVVDDVSCSG  240
IGQLQKMANI AQLKQMSSSV YSPASTLNYP QTPSPQCQTP KLLVNFLNAV CVLKPNIMLM  300
MEQDANHNAL LFCDRFVEAL NYYAALFDSF HAVIAANPRR SDERARVERM ILGEEIKNIL  360
VCEGVHRYER HERLSQWAMH MNRSGFDHVP LSFHAIWEGN QKLMSFGLNG CQSKVESDCL  420
LLCWGSTHLY SISAWRPHKG STSGSREHML VSHSAK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	4e-32	25	437	25	379	Protein SCARECROW
5b3h_D	4e-32	25	437	25	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G317000.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683876.1	0.0	scarecrow-like protein 3
TrEMBL	A0A368S203	0.0	A0A368S203_SETIT; Uncharacterized protein
STRING	Si012421m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	5e-88	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	Seita.7G317000.1.p