PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G313700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 556aa    MW: 59844.9 Da    PI: 4.794
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G313700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.71.2e-19101382127
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkya....tgkrknratksgyWk 84 
                         ++GfrF+P+  e+ ++yL + v+g +    +  v++++d+y +eP dL  + +   ++ + +fF++ + +++    + +r+  a+ sg W+
  Seita.7G313700.1.p  10 ARGFRFNPSPLEVATYYLPRLVAGAPlhEAVRAVVHHADVYGCEPGDLArQFFPLpRTGHRFFFTHCKLQQPhragKASRAAHAAGSGSWH 100
                         57************************532234469999**********83333332444789999988887743323445555677***** PP

                 NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         ++   k+v+++ g +vg  + L +     + g+ tdW+m+ey+
  Seita.7G313700.1.p 101 SQSV-KDVVDHAGVKVGEIRKLRYK----KGGTYTDWLMDEYS 138
                         9977.66667699***********8....56889********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-229159IPR003441NAC domain
PROSITE profilePS5100523.6119159IPR003441NAC domain
PfamPF023654.6E-1111138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MAAPGPAIFA RGFRFNPSPL EVATYYLPRL VAGAPLHEAV RAVVHHADVY GCEPGDLARQ  60
FFPLPRTGHR FFFTHCKLQQ PHRAGKASRA AHAAGSGSWH SQSVKDVVDH AGVKVGEIRK  120
LRYKKGGTYT DWLMDEYSCC LEDAVAGDRQ FVLCNIYVSP RADQGSAARQ ESAAFFAPPA  180
PAPAPVVIAQ AAAPKRPAPQ SAEPPCPKRM RGAVAPTPPV VQPAGYCTAS FAPPLPYVPH  240
IAASAQPPPP PVPTRLAVPP LSRSLEPAPS QPKQQMPPPP TLPVVRACHM PVEAPARHCQ  300
PPQPSVQRKQ STRDPFEAAE LRDEAEEERV AAPDPKESPA ALVDQDDDWA ELEKCMDDAV  360
PTAEGSTVSE AEMDQTKQST GDPFEAAELR DEAQKESVAA PGLAQDFDMD EFCRSLEGNG  420
DLVRLFEDED NALTAEAEEE AAANSEGSTM AEDAPDPSSM EESPAAAQDF DINEFCKSVQ  480
DDIRACELDH FACSFENESF SWEYGMGPPR RKPHASGSHS AAGTESTAKH WLPLRLSPSP  540
PCWARTAPPL PSTMP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G313700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978351.10.0atherin
TrEMBLA0A368S2100.0A0A368S210_SETIT; Uncharacterized protein
STRINGSi027582m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.12e-09NAC domain containing protein 57