PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G288200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 309aa    MW: 32379.4 Da    PI: 6.1377
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G288200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.62.6e-3921417129
                 TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                         +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+ +  + s +s a++   +        
  Seita.7G288200.1.p   2 PSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANYSsLNISIRSGAAAAA-Npsraapfp 91 
                         68**************************************************************66632222222222222.234223333 PP

                 TCP  89 ......kaaksaakskksqksaasalnlakesr................akarararertrek 129
                               +           +++aa   ++++ s                 +  +a  r+r re+
  Seita.7G288200.1.p  92 alalhpH-----------HHQAA--AAPHDMSAmmgyhhhllppqqqdpSAGDAYMRKRYRED 141
                         3322220...........22222..22222222222333333443333333333344444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-363140IPR005333Transcription factor, TCP
PROSITE profilePS5136928.31357IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
RPSKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPAILAATGT  60
GTIPANYSSL NISIRSGAAA AANPSRAAPF PALALHPHHH QAAAAPHDMS AMMGYHHHLL  120
PPQQQDPSAG DAYMRKRYRE DLFKEDDDRQ DPSAPKAREQ QAAATPPPPS AAMWAVGPNA  180
AAPSGGFWML PVSASSAAAA RPTEQPMWSF SGGGGGTGTV QAPLQFMSRA SYPSTAAAGG  240
GGGGMADTNI GMLAALNAYN RGGSEEQQQH QQPEGEQQHG GDGGGNDEED DDDSGEENHG  300
NNSSHCWG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G288200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269510.0KJ726951.1 Zea mays clone pUT3645 TCP transcription factor (TCP12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977266.10.0transcription factor PCF3
SwissprotQ53PH22e-72PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A368S0S60.0A0A368S0S6_SETIT; Uncharacterized protein (Fragment)
STRINGSi010765m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.14e-47TCP family protein