PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB

Protein Properties

Length: 251aa MW: 27174.5 Da PI: 8.8093

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G284900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.3	1.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv ++k +G g+W++ ++ g+ R++k+c++rw +yl Seita.7G284900.1.p 14 KGAWTKEEDQRLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	58.5	1.6e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEd+l++++++ lG++ W+ Ia +++ gRt++++k++w+++ Seita.7G284900.1.p 67 RGNFTEEEDDLIIKLHQILGNK-WSQIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.922	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.73E-30	13	108	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.70E-11	16	61	No hit	No description
PROSITE profile	PS51294	28.414	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	6.9E-18	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	8.2E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	2.30E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDDLIIK LHQILGNKWS QIAGRLPGRT DNEIKNYWNT HIKRKLLARG 120 IDPKTHRPLS VTAAAAAAPS SRPEDQPAAR SSCSPETSGA SNSSDEESGA SVPFRCSIDL 180 NLCISQPSQQ PSLPSTSSPP ARKQETEATS SATAVDASSR SYSDGKKICL CLNRLDLQGG 240 EGCTCGHGGR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-31	14	116	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.
UniProt	Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269\|PubMed:7920701}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G284900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM156905	1e-145	AM156905.1 Zea mays mRNA for transcription factor MYB8 (myb8 gene).
GenBank	EU963911	1e-145	EU963911.1 Zea mays clone 274019 hypothetical protein mRNA, complete cds.
GenBank	HQ858692	1e-145	HQ858692.1 Zea mays clone UT1148 ZmMYB8 transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977235.1	0.0	myb-related protein Zm38
Swissprot	P20025	3e-89	MYB38_MAIZE; Myb-related protein Zm38
Swissprot	P81393	2e-89	MYB08_ANTMA; Myb-related protein 308
TrEMBL	K3YEC2	0.0	K3YEC2_SETIT; Uncharacterized protein
STRING	Si012585m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	3e-88	myb domain protein 4

Link Out ? help Back to Top
Phytozome	Seita.7G284900.1.p
Entrez Gene	101782078

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903] Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]