PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G246700.1.p
Common NameLOC101783979, SETIT_009409mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 782aa    MW: 84480.4 Da    PI: 5.449
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G246700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-20105161157
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  Seita.7G246700.1.p 105 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 161
                         688999************************************************995 PP
2START205.71.8e-642985191206
                         HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SE CS
               START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlak 78 
                         ela +a++elv++a+++ep+W         e +n++e+ + f+++ +      ++ea+r+s vv+m++a+lve+l+d+++    ++ ++ +
  Seita.7G246700.1.p 298 ELAVTAMEELVRMAQLDEPLWNAPGldgssETLNEEEYSRMFPRGLGpkqygLKSEASRDSSVVIMTHANLVEILMDVNQyatVFSSMVSR 388
                         57899****************9866777889***********998889*******************************55555666666* PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                         a+tlev+s+g      galq+m+ e+q++splvp R+++fvRy++q  +g+w++vdvS+ds ++ +    v +++++pSg+li++++ng+s
  Seita.7G246700.1.p 389 AATLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNADGTWAVVDVSLDSLRPGS----VLKCRRRPSGCLIQEMPNGYS 475
                         ****************************************************************97....8******************** PP

                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         kvtwvehv++++r++h++++ lv+sgla+ga++wv tl+rqce+
  Seita.7G246700.1.p 476 KVTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCER 519
                         ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-2290160IPR009057Homeodomain-like
SuperFamilySSF466897.94E-2090162IPR009057Homeodomain-like
PROSITE profilePS5007116.989102162IPR001356Homeobox domain
SMARTSM003896.2E-20103166IPR001356Homeobox domain
CDDcd000861.46E-19105163No hitNo description
PfamPF000464.2E-18105160IPR001356Homeobox domain
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PROSITE profilePS5084841.952289522IPR002913START domain
SuperFamilySSF559613.08E-36290521No hitNo description
CDDcd088758.51E-124293518No hitNo description
SMARTSM002341.9E-60298519IPR002913START domain
PfamPF018521.3E-53299519IPR002913START domain
Gene3DG3DSA:3.30.530.202.1E-6360515IPR023393START-like domain
SuperFamilySSF559612.35E-24540771No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MMIPARHMPS MMIGRNSAAA AYGSSSALSL GQPNLLDNPQ LQQALQQQHL LDQIPATTAE  60
SGDDMMRGGR GSDPLGDEFE SKSGSENVDG VSVDDQDPNQ RPSKKKRYHR HTQHQIQEME  120
AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK NQHERQENSQ LRADNEKLRA  180
ENMRYKEALS SASCPNCGGP AALGEMSFDE HHLRIENARL REEIDRISAI AAKYVGKPMV  240
SFPVLSSPLA AARASTLDIG VGAGAYGATD IFGGVTAGAG ELLRGAVQSD ADKPMIVELA  300
VTAMEELVRM AQLDEPLWNA PGLDGSSETL NEEEYSRMFP RGLGPKQYGL KSEASRDSSV  360
VIMTHANLVE ILMDVNQYAT VFSSMVSRAA TLEVLSTGVA GNYNGALQVM SVEFQVPSPL  420
VPTRESYFVR YCKQNADGTW AVVDVSLDSL RPGSVLKCRR RPSGCLIQEM PNGYSKVTWV  480
EHVEVDDRSV HNIYKLLVNS GLAFGARRWV GTLDRQCERL ASVMASNIPT SDIGVITSTE  540
GRKSMLKLAE RMVMSFCGGV TASAAHQWTT LSGSGAEDVR VMTRKSVDDP GRPPGIVLNA  600
ATSFWLPVPP KRVFDFLRDE SSRSEWDILS NGGVVQEMAH IANGRDHGNC VSLLRVNSTN  660
SNQSNMLILQ ESCTDASGSY VIYAPVDVVA MNVVLNGGDP DYVALLPSGF AILPDGPAGG  720
NMQGDGGVGS GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN SLIACTVERI KAAVSGESNP  780
Q*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G246700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976894.10.0homeobox-leucine zipper protein ROC2
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLK3Y5C10.0K3Y5C1_SETIT; Uncharacterized protein
STRINGSi009409m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]