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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Seita.7G222500.1.p |
| Common Name | SETIT_012378mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
bHLH |
| Protein Properties |
Length: 465aa MW: 51116.1 Da PI: 4.9147 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.7G222500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 34.5 | 3.7e-11 | 264 | 310 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+a+ + Er RR+++N ++ +Lr l P++ +K++ a+i+ A+eYI +L
Seita.7G222500.1.p 264 KANFATERERREQLNVKYRTLRMLFPNP-----TKNDRASIVGDAIEYIDEL 310
68899***********************.....9***************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009555 | Biological Process | pollen development |
| GO:0048658 | Biological Process | anther wall tapetum development |
| GO:0052543 | Biological Process | callose deposition in cell wall |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 465 aa
Download sequence Send
to blast |
MIPGGGYFEG SHDQCLMAGP FIHDSSQIPK GNGDTSIELQ KFKVPSFSTE ALSSPTIFSS 60
EDVGGTNLLQ HQLGIDLEQE APPGETASWD PSVCTIQDQS INHQFGGYSE NMLVEPEIQQ 120
YDAALYPNGA YTPAPDLLNL LRINAASAFP AATSVFGDAA LNGSNYLDLN GELAGVAAIP 180
DNGLMFTGDS SVHLGYHATQ PHLANDICHS LPQNYGLFPG EDEREVMIGA GSLGDLFQEV 240
DDRQFDSVLE CRRGKGEFSK GKGKANFATE RERREQLNVK YRTLRMLFPN PTKNDRASIV 300
GDAIEYIDEL NRTVKELKIL VEQKRHGNNK EKRIKLDHQA AADGESSSVK PIRDDQDNQL 360
IGAIRSSWVQ RRSKECHVDV RIVDDEVNIK LTEKKKDNSL FHAAKVLDEF QLDLIHAVGG 420
VIGDHHIFMF NTKVPEGSSV YACAVAKRLL EAVDAQRQTF NIFN*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
