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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G169600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARF | ||||||||
Protein Properties | Length: 750aa MW: 80755.3 Da PI: 7.5009 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.6 | 1e-22 | 156 | 257 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+lt+sd+++ g +++p+ +ae++ ++ +s + +d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF Seita.7G169600.1.p 156 FAKTLTQSDANNGGGFSVPRFCAETIfpeldyrARPPVQS--VYARDVHGVEWSFRHIYRGTPRRHLLTTGWSNFVNKKRLLAGDSVVFV- 243 89*********************999****9986666675..************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++ +++ +v+++r+ Seita.7G169600.1.p 244 -REANGRIHVGLRRA 257 .4578889***9996 PP | |||||||
2 | Auxin_resp | 113.8 | 1.6e-37 | 306 | 389 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+ +++Fevv++Prast+eF+v+++ v+++++v++++GmRfkmafetedss++++ +Gt++gv+++dp+rWp+S+Wr+L+ Seita.7G169600.1.p 306 AARLAAAGQPFEVVHYPRASTPEFCVRAAAVRASMQVPWCPGMRFKMAFETEDSSRISWfMGTIAGVKAADPTRWPQSPWRLLQ 389 678999****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.62E-29 | 146 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-35 | 148 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.63E-20 | 155 | 256 | No hit | No description |
SMART | SM01019 | 7.2E-21 | 156 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-20 | 156 | 257 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.774 | 156 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.6E-32 | 306 | 389 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 16.36 | 662 | 740 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 750 aa Download sequence Send to blast |
MSAAACAPTR LGMLTFAERM PPPPPPPPPQ PQPEQLEEEV MIDGGAAAEG GVSPQLWLAS 60 AGSMCTVPPV GAAVYYFPQG HAEQASAAVD LPAAAVPPFV PCRVAAVRFM AEPHTDEVYA 120 RIRLVPLRSG EPVVDVGDAA AAGGDQQPQQ PNQASFAKTL TQSDANNGGG FSVPRFCAET 180 IFPELDYRAR PPVQSVYARD VHGVEWSFRH IYRGTPRRHL LTTGWSNFVN KKRLLAGDSV 240 VFVREANGRI HVGLRRAKRG FGAGAGGDDG FAGWGDAFGA LQVRGNAGGG ARYPGGKVPP 300 EDVVAAARLA AAGQPFEVVH YPRASTPEFC VRAAAVRASM QVPWCPGMRF KMAFETEDSS 360 RISWFMGTIA GVKAADPTRW PQSPWRLLQV GDILHEREIF FLNRWQIGNH RGGWLALPFS 420 QVAWDEPELL QNVKRVCPWL VEQVSSMPNL HLPSFTPRKK PRIPEFPLEG QPLFDPGFPP 480 AAHPLPPLAP HPRPHHDQNP HPHALVPLFP FPDGSAAAGI QGARHAQFAP FFSDLHVGNL 540 QQGLLFCGFR PADHHTTPPA PRISTDLAIG IPPPPRQDAP RSPPSAASKK ADDDVKPARI 600 MLFGRAILTE EQMNCNSPTS PGATGEGAPK PDRDAEKGPN TPDGSGSGVT EGSPTKNNLW 660 EPGQCKVFVK SDSVGRNLDL SALGTFDELY ARLAAMFRFD NADLRSHVLY RTATGEEKHV 720 GDEPFSAFVK SVRRITIRSD AGSDSTGSQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-70 | 32 | 442 | 30 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G169600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978138.4 | 0.0 | auxin response factor 10 | ||||
Swissprot | Q01I35 | 0.0 | ARFJ_ORYSI; Auxin response factor 10 | ||||
Swissprot | Q7XKK6 | 0.0 | ARFJ_ORYSJ; Auxin response factor 10 | ||||
TrEMBL | A0A368RWG7 | 0.0 | A0A368RWG7_SETIT; Auxin response factor | ||||
STRING | Si009541m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-162 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G169600.1.p |