PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G133100.1.p | ||||||||
Common Name | SETIT_012785mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 692aa MW: 73211.8 Da PI: 7.9631 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97 | 1.3e-30 | 272 | 329 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +Dgy+WrKYGqK+vk se+prsY++Ct+ +C+vkkkvers+ +++++ei+Y+g+Hnh+k Seita.7G133100.1.p 272 EDGYSWRKYGQKQVKHSEYPRSYFKCTHLNCQVKKKVERSH-EGHITEIIYKGTHNHPK 329 8****************************************.***************85 PP | |||||||
2 | WRKY | 104.8 | 4.7e-33 | 477 | 535 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe Seita.7G133100.1.p 477 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 535 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.769 | 266 | 330 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.8E-27 | 266 | 330 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.29E-25 | 266 | 330 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.8E-34 | 271 | 329 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-23 | 272 | 328 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.6E-37 | 462 | 537 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.19E-29 | 469 | 537 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.539 | 472 | 537 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.0E-38 | 477 | 536 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-25 | 478 | 535 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MEGHVAMEEW KDPNPPESLM RGFQTGTFPP DAEVAKAGFE KEGRSLPMTP QFGQKSSPGS 60 SLAERMQARA GFRVPKLSMP FSTAVGADNS VPGAPSPYLT IPPGLSPATL LDSPVFISNG 120 MGQTSPTTGK LFRLGGTNDN DPIRFGGSPL GAGPDSFSFK PLDLKSSLYT AEGKKESLCN 180 NQPPLPSTHV SVKTETKIQP VQEANLLGKL NQQNQSGQTN LKSGSHDSKL SRLAPVTGAG 240 NEHVSSPHGQ PMEEGDARGG DYTAIATSTP AEDGYSWRKY GQKQVKHSEY PRSYFKCTHL 300 NCQVKKKVER SHEGHITEII YKGTHNHPKP TQSRRPGVPP LHPFGDGAQA EAPDNQGSHS 360 NVAGARLNNA GIEDLHGDGT DATSPPSVPG ELCDSSASMQ IHDAGGLDVT SAVSDEVDGG 420 DRVTHGSLSQ GGADAEGDEL ESKRRKLESY TIDMSTASRA VREPRVVIQT TSEVDILDDG 480 YRWRKYGQKV VKGNPNPRSY YKCTHPGCSV RKHVERASHD LKSVITTYEG KHNHEVPAAR 540 NSGHPSTATA TGAAAARRPE HPSAHDGLMR HLGSCGAPFA LPLPSRDPLA PMVNYPAYAS 600 AALGGSGGSG LLPSLLMPGG GPLGQVEGLK LPMLAQSSLQ QQHPLLRHRQ AMQAAGLVAP 660 KAADVKVEGA GAAAPSVYQL MRNGLPLGHQ M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-36 | 272 | 538 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-36 | 272 | 538 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G133100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702708.1 | 0.0 | probable WRKY transcription factor 34 | ||||
Refseq | XP_022683649.1 | 0.0 | probable WRKY transcription factor 34 | ||||
TrEMBL | A0A368RV19 | 0.0 | A0A368RV19_SETIT; Uncharacterized protein | ||||
STRING | Si012785m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2075 | 38 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-118 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G133100.1.p |