PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G127600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 347aa    MW: 37316.6 Da    PI: 10.7223
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G127600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011128145320
                         ETTTTEEESSHHHHHHHH CS
             zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                         C  Cg++F+ ++ L rH 
  Seita.7G127600.1.p 128 CRVCGRRFRARDALLRHF 145
                         *****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.094126154IPR007087Zinc finger, C2H2
PROSITE patternPS000280128149IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MRRRPMTIST RAAAEAPFPG ATPSPMLRPL SFFRRRVLTA ALKLLAPPIS RSLSTAAAPA  60
ARKPSTAVAV LWDLAASRPP TTLPLYDAAV RLHLAATSFG RLRLSAAFVH PCHRLPAPAA  120
PAATTHLCRV CGRRFRARDA LLRHFDAIHA REHAKRLARI DSSRGDRRVR LAAALSLKLS  180
KYEKAARELT AGADAAAATP ADEIGRAGVR VALTRTPAAS LRERAQQVLD EGSVGCLMLV  240
SGKDELASLL RVARERGVRS VVVGGESGLA RWADVGFSWA EVITGKARTA APDVLKGLEW  300
RYEEDDEEEV VFEDSDGDGA EELARKSKGK PWWKLDSDGE DSSNGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G127600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823075.11e-180uncharacterized protein LOC112898963
TrEMBLA0A368RUU70.0A0A368RUU7_SETIT; Uncharacterized protein
STRINGSi010574m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122342023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.12e-27C2H2 family protein