PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G093800.5.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family E2F/DP
Protein Properties Length: 484aa    MW: 52367.8 Da    PI: 9.1284
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G093800.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP81.38.2e-26200265171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         r+++sL llt+kf++ll+++++gi++ln+ a++L   +v  ++RR YDi+NVLe+++liekk+kn+i+wkg
  Seita.7G093800.5.p 200 RYDSSLALLTRKFVSLLKQVQDGILDLNSTAEKL---HV--QKRRMYDITNVLEGIGLIEKKSKNRIHWKG 265
                         6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-27198267IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.09E-16200263IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.8E-32200265IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.3E-23202265IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.32E-40277381No hitNo description
SuperFamilySSF1440745.49E-29278382No hitNo description
PfamPF164211.6E-29280380IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MSGGARPAAS QQIVQSLQRC ALLPPVGPPF ADALGDYHRF PRPSSSPAAA AAAAAPLAGG  60
RGGIEEGIVL RAPVSRLSPV RPPFASAPGD YHRFPRPSSP AAAAAPLAGG RGGIEEGIVA  120
RTPLKRKAPY EGSGIAESLE LVMTSHGFNG GVGTPLGAPV SGKSARTYKS KAKCCKAEPQ  180
TPISNAGSPG NPPTPAVPCR YDSSLALLTR KFVSLLKQVQ DGILDLNSTA EKLHVQKRRM  240
YDITNVLEGI GLIEKKSKNR IHWKGLDESG TNLDNALSVL KNEVENLNLQ EQALDEHISE  300
MRKKLETLTE DENRQRWLFL TEDDIKGLPC FQNQTLIAIK APHGTSVEVP NPDLMAVESF  360
QRRYRIIIRS AMGPVDLYLV SNFEEKLEGK LDDIATLASH TYFAKCAASV KGPRTKRAQR  420
NRKEAVLNAQ QIHKTPDLNA PCPSEGVLRK ILPKDVDSDA DYWLLTDDDV SITDMWRTAR  480
ILF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A9e-25195266274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G093800.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702640.10.0transcription factor E2FB isoform X3
TrEMBLA0A368RU290.0A0A368RU29_SETIT; Uncharacterized protein
STRINGSi009650m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-105E2F transcription factor 3