PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G093800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family E2F/DP
Protein Properties Length: 525aa    MW: 56580 Da    PI: 6.8503
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G093800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP81.19.3e-26201266171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         r+++sL llt+kf++ll+++++gi++ln+ a++L   +v  ++RR YDi+NVLe+++liekk+kn+i+wkg
  Seita.7G093800.1.p 201 RYDSSLALLTRKFVSLLKQVQDGILDLNSTAEKL---HV--QKRRMYDITNVLEGIGLIEKKSKNRIHWKG 266
                         6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-27199268IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.27E-16201264IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.8E-32201266IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.7E-23203266IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.70E-40278382No hitNo description
SuperFamilySSF1440746.28E-29279383No hitNo description
PfamPF164211.8E-29281381IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSGGARPAAS QQIVQSLQRC ALLPPVGPPF ADALGDYHRF PRPSSSPAAA AAAAAPLAGG  60
RGGIEEGIVL RAPVSRLSPV RPPFASAPGD YHRFPRPSSP AAAAAPLAGG RGGIEEGIVA  120
RTPLKRKAPY EGSGIAESLE LVMTSHGFNG GVGTPLGAPV SGKSARTYKS KAKCCKAEPQ  180
TPISNAAGSP GNPPTPAVPC RYDSSLALLT RKFVSLLKQV QDGILDLNST AEKLHVQKRR  240
MYDITNVLEG IGLIEKKSKN RIHWKGLDES GTNLDNALSV LKNEVENLNL QEQALDEHIS  300
EMRKKLETLT EDENRQRWLF LTEDDIKGLP CFQNQTLIAI KAPHGTSVEV PNPDLMAVES  360
FQRRYRIIIR SAMGPVDLYL VSNFEEKLEG KLDDIATLAS HTYFAKCAAS VKGPRTKRAQ  420
RNRKEAVLNA QQIHKTPDLN APCPSEGVLR KILPKDVDSD ADYWLLTDDD VSITDMWRTA  480
PEMEWDQIDP NDFLAEEVST PGPGTLNQQP DANGEPTADG PNHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-24196267274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G093800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977980.10.0transcription factor E2FB isoform X2
TrEMBLA0A368RU110.0A0A368RU11_SETIT; Uncharacterized protein
STRINGSi009650m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-108E2F transcription factor 3