![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.7G088400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | S1Fa-like | ||||||||
Protein Properties | Length: 81aa MW: 8835.54 Da PI: 10.4802 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 135.3 | 1.5e-42 | 11 | 80 | 2 | 70 |
S1FA 2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +v ++e+ kGlnPG+ivllvv+++ll+f+vgny+lyvyaqk+lPP+kkkPvskkklkreklkqGv++PGe Seita.7G088400.1.p 11 NVIIEEVnKGLNPGMIVLLVVASFLLLFFVGNYALYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 80 55667778*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 3.0E-8 | 12 | 80 | No hit | No description |
Pfam | PF04689 | 1.5E-39 | 16 | 80 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 81 aa Download sequence Send to blast |
MADQFADSAN NVIIEEVNKG LNPGMIVLLV VASFLLLFFV GNYALYVYAQ KTLPPKKKKP 60 VSKKKLKREK LKQGVSAPGE * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.7G088400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU958788 | 5e-88 | EU958788.1 Zea mays clone 207858 DNA-binding protein S1FA2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975537.1 | 1e-50 | DNA-binding protein S1FA2 | ||||
Swissprot | Q7XLX6 | 1e-34 | S1FA2_ORYSJ; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A368RVD0 | 3e-49 | A0A368RVD0_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Gb01773.1.p | 1e-42 | (Panicum virgatum) | ||||
STRING | Si011030m | 2e-42 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5154 | 35 | 63 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.7G088400.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|