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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G054400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 225aa MW: 24429.2 Da PI: 9.0369 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.7 | 3.6e-12 | 23 | 101 | 11 | 98 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++++ l++p + a+e+ + + + +++++W+v + + +++ +l++GW+ F+ a g+++g f+v+++ rs++ l++k+f+ Seita.7G054400.1.p 23 FTRDSLRIPDELAAEIAAE-----EALVVGSHSKVWRVGIGW--DGDGALLGRGWRAFAAACGVESGWFLVLRH--RSRGLLTLKAFD 101 57889********999755.....578899**********54..444589***********************4..567767887776 PP | |||||||
2 | B3 | 36.3 | 9.9e-12 | 141 | 222 | 12 | 94 |
HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + g + +p +fa+++ +++ +++++++ + g++ ++l + +++++++++GW++F +g+ e D ++++++g++ f+ +v Seita.7G054400.1.p 141 SMGKMLIPARFAQHYiPKDHLNNRMVIISGPLGKVCPIEL--EMNQSSMFFAGGWSQFMAFHGITEADALLLRYEGNMAFTIKV 222 55779*******888966667788999999**********..88888899****************************996554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.319 | 13 | 103 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.19 | 20 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.6E-9 | 23 | 101 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-9 | 24 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-10 | 26 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-14 | 128 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.925 | 130 | 224 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.32E-15 | 131 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.015 | 133 | 224 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.8E-10 | 140 | 222 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.18E-11 | 141 | 223 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MASSSSGCHG AATAKHRCVL LRFTRDSLRI PDELAAEIAA EEALVVGSHS KVWRVGIGWD 60 GDGALLGRGW RAFAAACGVE SGWFLVLRHR SRGLLTLKAF DDDRCLTELG AQTTAPAVEA 120 TTNYKGASRK PQFINVFPTK SMGKMLIPAR FAQHYIPKDH LNNRMVIISG PLGKVCPIEL 180 EMNQSSMFFA GGWSQFMAFH GITEADALLL RYEGNMAFTI KVLG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G054400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683952.1 | 1e-167 | putative B3 domain-containing protein Os04g0347400 | ||||
Swissprot | Q7XS74 | 8e-51 | Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A368RS65 | 1e-165 | A0A368RS65_SETIT; Uncharacterized protein | ||||
STRING | Si010378m | 1e-153 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31615.1 | 1e-06 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G054400.1.p |