PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G054300.1.p | ||||||||
Common Name | SETIT_010378mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 13596.8 Da PI: 10.3596 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.6 | 3.9e-12 | 46 | 110 | 21 | 86 |
HH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 21 kfaeehggkkeesktltledesg..rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 +f++++g k++ ++tl+d+ g sW+v+ ++++ + l++GWk+ +++ gLk gD++++k+++ Seita.7G054300.1.p 46 PFCNAIGFRKRC--MITLQDSMGstSSWQVRG--LPYKNGgCQLGSGWKKVCQDTGLKYGDVITLKVIK 110 688888888777..7*****998889*****9..333333377**********************9775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-12 | 46 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.8E-12 | 46 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.9E-9 | 46 | 110 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.53 | 59 | 121 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MNNWPDTDGQ RRPKGFVTPS KKKKNKSSET NCAYDLGPPA CLYRAPFCNA IGFRKRCMIT 60 LQDSMGSTSS WQVRGLPYKN GGCQLGSGWK KVCQDTGLKY GDVITLKVIK TRLWDVIIMR 120 S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G054300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A368RSH9 | 2e-84 | A0A368RSH9_SETIT; Uncharacterized protein | ||||
STRING | Si010378m | 2e-70 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G054300.1.p |