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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.6G252000.1.p |
Common Name | SETIT_013894mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
C2H2 |
Protein Properties |
Length: 395aa MW: 42196.4 Da PI: 8.4432 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.6G252000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 22.3 | 3.3e-07 | 217 | 239 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ Cgk F+r nL+ H+r H
Seita.6G252000.1.p 217 HYCQVCGKGFKRDANLRMHMRAH 239
68*******************99 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 395 aa
Download sequence Send
to blast |
MIGGGGNPYF VQNQLFHHAL DGMDGGFMEP PASDPADAHC HALLYNLSVL RDKVQQLQPL 60 VGLAVEHDGP GGAAVSSAGA VIQEIITAAS SMMYAFQQLC GLHAGAQSST TAANAAPAVT 120 NNIAAAAVGH AKNSGMPDTD PQAAVVMDHH VMQQQWQPQH HHRCGYGYDN RIHARTAVPS 180 QSQSQPATAA TTAEEEAGGG GTIIELDAAE LLAKYTHYCQ VCGKGFKRDA NLRMHMRAHG 240 DEYKSSAALA NPAKAAGAGD SAAAATTSSR SYYSCPQEGC RWNRKHAKFQ PLKSVICAKN 300 HYKRSHCPKM YVCNRCNRKH FSVLSDLRTH EKHCGDHRWV CSCGTFFSRK DKLIGHLALF 360 TGHHPAVPLD RQPNGGGRRL SSSTASASQL DKQA*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK063290 | 1e-159 | AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence. |
GenBank | AP004587 | 1e-159 | AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10. |
GenBank | AP005544 | 1e-159 | AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01. |
GenBank | AP014964 | 1e-159 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
GenBank | CP012616 | 1e-159 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |