PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G248300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Nin-like
Protein Properties Length: 1070aa    MW: 117460 Da    PI: 5.8693
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G248300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.73.6e-26696746252
              RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         ek+ sl++l+kyFs+++++A+ +Lgvc+T+LKriCRq+GI+RWP+Rki+++
  Seita.6G248300.1.p 696 EKNFSLDVLRKYFSGSLREASMSLGVCPTTLKRICRQHGISRWPSRKINKV 746
                         899**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.677680766IPR003035RWP-RK domain
PfamPF020421.3E-23699746IPR003035RWP-RK domain
SuperFamilySSF542776.45E-249611050No hitNo description
Gene3DG3DSA:3.10.20.2408.4E-239641046No hitNo description
SMARTSM006661.1E-209671049IPR000270PB1 domain
PROSITE profilePS5174525.5569671049IPR000270PB1 domain
PfamPF005641.1E-169681048IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1070 aa     Download sequence    Send to blast
MAPSPPGKGK GKKKDDIDDL PEEDLALKEQ LELYVLRAQD ADPGVQKLAL ESMRQEIRSA  60
TSSMTSVPKP LKFLRPHYGA LKSYFETMPE SELKKYMADI LSVLALTMSV EGERESLKYR  120
LLGSEGDIGS WGHEYVSPMG PSDDPFGVAA MMNFDGYSEV CSPSVADQIF SMLNDPSAAQ  180
QMFAMWSSLG SSPCTSAVRE DMPFDTYSEP VDMTAAPAQR INSASALGPT GVNRELKVSD  240
ELVPNNGSQQ GTNIIPRSVG NVLADKMLMA LSLFRKSLSD GVLAQVWMPI EHNGRIVLST  300
FEQPFLLDQD LAGYREVSRN FLFSVKEEPG LHLGLPGRVF ISGVPEWTSS VLYYSKPEYL  360
RMDHALRHEI RGSLAMPIYD PSKGSCCAVL ELVTNKEKPD FDAEMDSVCN ALQAVNLQTA  420
TDRSSQKVPL FTSNMLHVYS ENQKSAFIEI LDVLRAICHA HMLPLALTWV PTSNGIDNGY  480
CVRNNIGVDS QSGKTVLRIH ESACYINDAK MQGFLHACAE RHLEKGQGIA GRALKSNLPF  540
FSPDVREYNI EDYPLAHHAR KFGLHAAVAI RLRSTYTGND DYILEFFLPV NCKGCGEQQM  600
LLNNLSSTMQ RICKSLRTVS EAEADSVSAS AASMNKKSNG SLPTGNSESS SHDDQPITES  660
AFQDLSLADK QEQDIESDQA QASSMRVAEK KRSTSEKNFS LDVLRKYFSG SLREASMSLG  720
VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKIQTVINSV HGVDRSLQYD PATGSLVPAA  780
SLPDKMPFSA CDSLPTSSVG KTMEEKSSPK SEQGFSSPDG WQRGDCQFHV SNISKREGEG  840
DEVRMLANNN NGSRNYAPDV AKFTPHSNSE DAQGPLYPIV VNSLRIGETG YTNSPTSLHP  900
SIDDQTMGRN SSFVQQADVT MVDGHDTKEH THPSTSGMTD SSSGSASSQP TFKGNPGYVI  960
KDRSSPALTV KATYNGDTVR FKFLPAMGWY HLLEEIAKRF RLTTGAFQLK YKDDEDEWVI  1020
LASDSDLQEC VDILDSIGSR NVKLQVRDLP CLISSSGSSS CLQVTGRET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5vfs_f3e-3431362315426S proteasome non-ATPase regulatory subunit 2
5vhf_f3e-3431362315426S proteasome non-ATPase regulatory subunit 2
5vhh_f3e-3431362315426S proteasome non-ATPase regulatory subunit 2
5vhi_f3e-3431362315426S proteasome non-ATPase regulatory subunit 2
5vhm_f3e-3431362315426S proteasome non-ATPase regulatory subunit 2
5vhn_f3e-3431362315426S proteasome non-ATPase regulatory subunit 2
5vho_f3e-3431362315426S proteasome non-ATPase regulatory subunit 2
5vhq_f3e-3431362315426S proteasome non-ATPase regulatory subunit 2
5vhr_f3e-3431362315426S proteasome non-ATPase regulatory subunit 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G248300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277560.0KJ727756.1 Zea mays clone pUT5699 NLP transcription factor (NLP3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683547.10.0LOW QUALITY PROTEIN: protein NLP2-like
SwissprotQ0JC270.0NLP2_ORYSJ; Protein NLP2
TrEMBLA0A368RQ040.0A0A368RQ04_SETIT; Uncharacterized protein
STRINGSi013186m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-178Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]