PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G232500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 425aa    MW: 46517.8 Da    PI: 7.2832
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G232500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.21.3e-11104132533
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                         k  rr+++NReAAr+sR+RKka+i++Le 
  Seita.6G232500.1.p 104 KTVRRLAQNREAARKSRLRKKAYIQQLES 132
                         5679***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.1E-5100175IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.4E-8102144No hitNo description
PROSITE profilePS502178.864102146IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.82E-7104137No hitNo description
PfamPF001701.1E-8104133IPR004827Basic-leucine zipper domain
CDDcd147085.59E-21104156No hitNo description
PROSITE patternPS000360107122IPR004827Basic-leucine zipper domain
PfamPF141443.7E-28184257IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
METPSPFPLL LLLLATALYV HGFPAWPMTM RSVHTPKEGS NLTVDNTDDS KSSSKNTNNH  60
SSDHQLGAAA ANMASQFDQV PQQIQHKDMA TGSTPKTGKA LDPKTVRRLA QNREAARKSR  120
LRKKAYIQQL ESSKLKLAQM EQDVQRARSQ GLFLGGGPGA NTSSGAAMFD VGYARWLDDH  180
GRRMAELQGA LHAHLPDGDL RAIVDDTLTH HDELFQLKVV AAKSDVSHLI TGAWTTPAER  240
CFLWMGGFRP SDLLKTLLPQ LDPLTEQQVV GICNLQRSSQ EAEEALSQGL EQLHQSLADT  300
MAGGSLIDDI NMSFMGQMAL ALGKLANLEG FVIQADNLRQ QALHQMHRIL TVRQAARCFL  360
AIGEYHNRLR ALSSLWASRP REMLVADEGN CGEISVATQP SQSQFSSLLT HAVELTFSLG  420
AREK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G232500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683425.10.0transcription factor TGAL4-like isoform X1
SwissprotQ53Q700.0TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBLA0A368RPK70.0A0A368RPK7_SETIT; Uncharacterized protein
STRINGSi014861m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44443670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-139bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]
  3. Miyamoto K, et al.
    Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.
    J. Plant Physiol., 2015. 173: p. 19-27
    [PMID:25462074]