PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G198600.1.p
Common NameSETIT_013374mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 670aa    MW: 72792.3 Da    PI: 6.7166
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G198600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.3e-31281337259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers+  ++++ei+Y+g+H h+
  Seita.6G198600.1.p 281 EDGYNWRKYGQKQVKNSEHPRSYYKCTHPNCPVKKKVERSQ-KGHITEIVYKGSHSHP 337
                         8****************************************.9**************7 PP
2WRKY104.55.8e-33473531159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++d k v++tYeg+Hnhe
  Seita.6G198600.1.p 473 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYAGCTVRKHVERASNDLKSVITTYEGKHNHE 531
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.32275339IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.8E-29277339IPR003657WRKY domain
SuperFamilySSF1182906.67E-26278339IPR003657WRKY domain
SMARTSM007741.8E-35280338IPR003657WRKY domain
PfamPF031061.0E-24281337IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.5E-37458533IPR003657WRKY domain
SuperFamilySSF1182908.89E-29465533IPR003657WRKY domain
PROSITE profilePS5081137.516468533IPR003657WRKY domain
SMARTSM007741.6E-37473532IPR003657WRKY domain
PfamPF031062.8E-25474531IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MAGTDNRRAL MEDWMLPSPS PRTVMSSFLN EEFSSCPFSS IFSDNGSSKP LDAIEKSKTL  60
VDSSVEETVQ NTKAPLQLES NLFRANQEST SHGGLAERMA ARAGFGVLKI DTSRVSSSAP  120
IRSPVTIPPG VSPRELLESP VFLPNAIAQP SPTTGKLPFL MPNNFKSMIS SVPKKAEDYF  180
HDDCAFSFQP ILMSKPPSFS TVDKGLSAVH QNQSLANYSQ ELSLQANTTA TKDETEENLV  240
KPSTCDSMLD NDHPSPADEQ EESEENQNEE DSSVPVIAPA EDGYNWRKYG QKQVKNSEHP  300
RSYYKCTHPN CPVKKKVERS QKGHITEIVY KGSHSHPLPP PNRRPSVPSS HVNDLQADGS  360
ENFCSKPVKF LKRNLSGSLT TTEIADTCVM ESQEAVDVSS TLSSNEKDER ATQCTIPSTY  420
RGDDDETESK RRKMEVSAAA NTTTNAIDMA AMASRAVREP RIVVQTTSEV DILDDGYRWR  480
KYGQKVVKGN PNPRSYYKCT YAGCTVRKHV ERASNDLKSV ITTYEGKHNH EVPAARNSSG  540
HPNSGSNAAP QGSNLHRRPE PAQPSIPQLN AAAAYGSLGL PPQLSAASGG FSFGLLPPGM  600
AVPVPSLGTF MPAPIPGHPP TMQGCTGLVV PRGEVKVNLE EQSRLQVANG NAMAAYQQFM  660
GRLPQGPQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-36281534878Probable WRKY transcription factor 4
2lex_A4e-36281534878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G198600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702098.20.0LOW QUALITY PROTEIN: probable WRKY transcription factor 2
TrEMBLK3YGK60.0K3YGK6_SETIT; Uncharacterized protein
STRINGSi013374m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-122WRKY DNA-binding protein 2