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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G192000.1.p | ||||||||
Common Name | LOC101771138, SETIT_013622mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 496aa MW: 53729.5 Da PI: 9.0667 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.1 | 1.3e-17 | 213 | 262 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lre+lP++ ++K +Ka+ L +++eYI+ Lq Seita.6G192000.1.p 213 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLLEVIEYIRFLQ 262 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-23 | 210 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-18 | 211 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.888 | 211 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.55E-16 | 213 | 266 | No hit | No description |
Pfam | PF00010 | 4.3E-15 | 213 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-13 | 217 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MGLQGDKATH DFLSLYSAAK DSALPLLPPE SKPPPPSHQG FFLKTHDFLQ PLERPSSQSP 60 PPLPSRPAAE KQLRQHALPG GIGTFSISRA AAAAADQPGA AVKQEQPPFA VWGQPDPRGH 120 PWSLPFAARC VAVASARPQP QQQPQRQPER KAGGGFMDAG SRSSGGAGFD DDDGLAARRE 180 VSSSLKELSV RVETKGGSCS GSAGTDQLPN TPRSKHSATE QRRRSKINDR FQILREILPQ 240 NDQKRDKASF LLEVIEYIRF LQEKVQKYEV SHPEWNQENA KIMPWSNIYF RSSWKNSQNK 300 DEINGDMVSS DPTQVTKNGS SPRFPFAAKT EDHNNAGAFE TAPGAQELAE LKGCVPFKQA 360 ETPNNVTNTV ASQQQAQLTN SSPSDDSAVP NGMLNNPELA IDEGTISLSS QYSQGLLTTL 420 NLALQNSGVD LSQASISVQI NLGKRATKRS APVSNSTSKD LINQASRDQE IGHQLRSGDG 480 AREHTQATKR HKSDR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G192000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973763.1 | 0.0 | transcription factor BIM1 | ||||
TrEMBL | K3YHA4 | 0.0 | K3YHA4_SETIT; Uncharacterized protein | ||||
STRING | Si013622m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 8e-53 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G192000.1.p |
Entrez Gene | 101771138 |