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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.6G188700.1.p |
Common Name | LOC101761664, SETIT_014062mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
Trihelix |
Protein Properties |
Length: 332aa MW: 36722.7 Da PI: 5.1402 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.6G188700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 57.4 | 3.8e-18 | 28 | 114 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergfer.spkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84
W++ e+l+Li+a+ e++++l+rg+lk+++Weev++ ++r + +qC++k+e+l+kry+ ++++ s + +f++
Seita.6G188700.1.p 28 WSDPETLHLIDAYDERWTALGRGQLKAQQWEEVAADTaarcaatPGLAVQRkTGTQCRHKLEKLRKRYRTEAARPVT------SLWTFFRR 112
***********************************999999976555666659*****************9998875......58999999 PP
trihelix 85 le 86
++
Seita.6G188700.1.p 113 MD 114
98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MMAAGAHEDS DEPPRRSALK KSAPAQPWSD PETLHLIDAY DERWTALGRG QLKAQQWEEV 60 AADTAARCAA TPGLAVQRKT GTQCRHKLEK LRKRYRTEAA RPVTSLWTFF RRMDQLERGP 120 NAASSAYPAA GGSPPAAASD EEEEEEEDEE ENQEDEEEEE EELIPRNNTR SINGIIREFG 180 SGLAPRHPQL QLQQQQQPPP PPSITPSTAP PRKRVAYEAF QAKAAAAAAA AVAADKAKEE 240 EVELVRRRPS GPGGASAQLS AVLRDFSDGV MRLERRRMEM QWEIERGWQE TEARHAQMLQ 300 DAQRQLRDAI AAACSLPPKK ARRDYGSSGD S*
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