PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G185900.1.p
Common NameLOC101783279, SETIT_015340mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ZF-HD
Protein Properties Length: 299aa    MW: 30532.9 Da    PI: 7.0894
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G185900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.82.2e-3276129458
         ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                         +rY+eClkNhA+ +GghavDGCgEfm++ geeg+++al+CaACgCHRnFHR+e++
  Seita.6G185900.1.p  76 TRYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGSIDALRCAACGCHRNFHRKESD 129
                         79*************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.4E-2976128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.4E-3077127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-2477128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.96378127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.82E-21221296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-32225297IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-25235291IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDFDEHDDGD GDEEMTPMPV TSSYDAPMQS GLGLGGGGGT PKPGDSGGGG SFRTQGPGGG  60
GGGGGGGVGG GGGGGTRYRE CLKNHAVGIG GHAVDGCGEF MAAGEEGSID ALRCAACGCH  120
RNFHRKESDS PTGGAAPADP TAALSPAAIT AYGAAAHHHQ FSPYYRTPAG YLLHQHQQLA  180
AAAAGHMQRP LALPSTSHSE GDDMSGLIGP MVVAPMVGMS LGGSGGGPSG SGSGKKRFRT  240
KFTQEQKDRM LAFAERLGWR IQKHDEAAVQ QFCEEVCVKR HVLKVWMHNN KHTLGKKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-282362931875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G185900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9632770.0EU963277.1 Zea mays clone 260287 ZF-HD protein dimerisation region containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973708.10.0zinc-finger homeodomain protein 2
SwissprotA2YWA61e-121ZHD2_ORYSI; Zinc-finger homeodomain protein 2
SwissprotQ6ZB901e-121ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBLK3YM620.0K3YM62_SETIT; Uncharacterized protein
STRINGSi015340m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-30homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]