PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.6G180900.1.p

Common Name

LOC101765591, SETIT_013904mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 361aa MW: 37640.5 Da PI: 6.9223

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.6G180900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.5	1.7e-14	282	333	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N +L+k+ +e+ ++ Seita.6G180900.1.p 282 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKELNAELQKKQDEMMEMQ 333 79******************************************99999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-13	278	342	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.875	280	331	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.50E-26	282	336	No hit	No description
Pfam	PF00170	9.3E-13	282	334	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.3E-15	282	331	No hit	No description
SuperFamily	SSF57959	1.2E-10	282	332	No hit	No description
PROSITE pattern	PS00036	0	285	300	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MDLKDGERRG AAGPGPLSRQ GSIYSLTFDE FQSTLGGMGG GLGKDFGSMN MDELLRSIWT 60 AEESQAMASA SAAASASAAG AAGEDGAALQ RQGSLTLPRT LSVKTVDEVW RDFVREGPAP 120 GAAGGGAEPQ PNRQPTLGEM TLEEFLVRAG VVRDNPTAAA MAAAAAVPAQ PVAPRPIQAV 180 SNGASIFFGN FGAANDAGTG AMGFAPVGIG DQAMGNGLMP GVAGMASAAV TVSPVDTSVA 240 QLDSVGNGNG DLSSPMAPVP YPFEGVIRGR RSGAGVEKVV ERRQRRMIKN RESAARSRAR 300 KQAYTMELEA EVQKLKELNA ELQKKQDEMM EMQKNQVLEV VSNPYAQKKR CLRRTLTGPW 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MDLKDGERRG AAGPGPLSRQ GSIYSLTFDE FQSTLGGMGG GLGKDFGSMN MDELLRSIWT  60
AEESQAMASA SAAASASAAG AAGEDGAALQ RQGSLTLPRT LSVKTVDEVW RDFVREGPAP  120
GAAGGGAEPQ PNRQPTLGEM TLEEFLVRAG VVRDNPTAAA MAAAAAVPAQ PVAPRPIQAV  180
SNGASIFFGN FGAANDAGTG AMGFAPVGIG DQAMGNGLMP GVAGMASAAV TVSPVDTSVA  240
QLDSVGNGNG DLSSPMAPVP YPFEGVIRGR RSGAGVEKVV ERRQRRMIKN RESAARSRAR  300
KQAYTMELEA EVQKLKELNA ELQKKQDEMM EMQKNQVLEV VSNPYAQKKR CLRRTLTGPW  360
*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.6G180900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973666.1	0.0	bZIP transcription factor TRAB1
Swissprot	Q6ZDF3	1e-153	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	K3YIB0	0.0	K3YIB0_SETIT; Uncharacterized protein
STRING	Si013904m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	4e-71	abscisic acid responsive element-binding factor 1

Link Out ? help Back to Top
Phytozome	Seita.6G180900.1.p
Entrez Gene	101765591

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]