PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G178200.1.p
Common NameLOC101760339, SETIT_013598mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 504aa    MW: 54900.5 Da    PI: 10.8705
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G178200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57394.21.3e-29249346297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                         ++ r+ws eDei++L +l++++ak+g+   + +d+ ++++++++++ +++s++ql++K+rrLK+K+k   ++a++g++p++ ++h+++++e
  Seita.6G178200.1.p 249 RPPRVWSPEDEITILSALVEYRAKKGQlpASIQDTGKVHSQISGQLTANASTTQLSDKVRRLKHKYKLLFTRARNGRDPDLPTQHERDVYE 339
                         578************************777888********************************************************** PP

              DUF573  91 lskkiWg 97 
                         lskk+Wg
  Seita.6G178200.1.p 340 LSKKVWG 346
                         ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-28251346IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MAPKRPAAAA DAAAGSGSDA SDGGAGDVRY SRRRRRRNSP SPIPSRSPSR SRSRSRSKTP  60
PPNLRPNAAA LSSTPTSAGA DFVAASDSDA DAGGGRGRVS SPRRRDRKGA PRDRLDSDAD  120
ADASAGGRAP SPRRRRKRSP SFHSDSDADA GGRVPSPRRN RERTPRLHSD SDSDNSAAAA  180
GSEDDGAGAG DASSLPRARR SSRIETSNIK PVSTRPMEAP RRAPAGSSQR RSKRRHSSPG  240
RASPEHQKRP PRVWSPEDEI TILSALVEYR AKKGQLPASI QDTGKVHSQI SGQLTANAST  300
TQLSDKVRRL KHKYKLLFTR ARNGRDPDLP TQHERDVYEL SKKVWGFKSG DILGGSHAYE  360
DTGDAESNEE QEIEESDDAM ENGWEHHERP GKKPKAFRFE NGNGNALAAV GRASHGNGSG  420
RDDAEKGKQM YPYLWEAVAE LSKEHPSGPI FRKAFGVLEK SKAQAMEEKL RKFRMSEIRQ  480
QLHRMDLMKE TMRMVLDALE GSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12836RYSRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G178200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702606.10.0STOREKEEPER protein
TrEMBLK3YH800.0K3YH80_SETIT; Uncharacterized protein
STRINGSi013598m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.11e-13DNA-binding storekeeper protein-related transcriptional regulator