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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Seita.6G171000.1.p |
Common Name | LOC101774645, SETIT_015027mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
ERF |
Protein Properties |
Length: 223aa MW: 23744.2 Da PI: 5.2849 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.6G171000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 54.2 | 3.6e-17 | 24 | 73 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+ykGVr +k +grWv+eIr p++ r r++lg++ +ae+Aa+a +aa+ +l+g
Seita.6G171000.1.p 24 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 73
7******99.**********933...5*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MDDGAGGASR SDGEGSPRPA AERRYKGVRL RKWGRWVSEI RMPNSRERIW LGSYESAEKA 60 ARAFDAAAVC LRGSRAGSLN FPESPPNVRH VPGALLTPEQ IQAEAVRHAN QPASPLASSP 120 SQQATTPGGR ASTDRTALSQ PSTYGSGASL AGGDDALDWS FMDTLPSMPA AGTNAHHIVP 180 ALDDFMYGSP HPVMPPSGEP SQDMMIDGDD DHTFISDDLW RF*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728382 | 1e-101 | KJ728382.1 Zea mays clone pUT6665 AP2-EREBP transcription factor (EREB199) gene, partial cds. |