PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

ZF-HD

Protein Properties

Length: 122aa MW: 12496.2 Da PI: 8.2912

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.6G160500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	93.7	1.6e-29	31	85	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +vrY eC++NhAas+GghavDGC+Ef+++ geegt+aal+CaACgCHR+FHRr v+ Seita.6G160500.1.p 31 GVRYGECRRNHAASMGGHAVDGCREFLAE-GEEGTTAALRCAACGCHRSFHRRVVQ 85 68************************8.999******************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-18	32	85	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.6E-29	32	84	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.0E-25	33	82	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.645	34	83	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MKRMVILRRC HPPPPPEALL AGGCCGGGGG GVRYGECRRN HAASMGGHAV DGCREFLAEG 60 EEGTTAALRC AACGCHRSFH RRVVQRCCCC LCCGAGAAAR WGGGDDGRCS PESSASSTTP 120 R*

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.6G160500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065618	2e-73	BT065618.1 Zea mays full-length cDNA clone ZM_BFb0349A13 mRNA, complete cds.
GenBank	EU971969	2e-73	EU971969.1 Zea mays clone 372958 mini zinc finger 3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973532.1	1e-79	mini zinc finger protein 4-like
Swissprot	Q0J5F8	4e-35	MIF4_ORYSJ; Mini zinc finger protein 4
TrEMBL	A0A368RMB8	3e-78	A0A368RMB8_SETIT; Uncharacterized protein
STRING	GRMZM2G370863_P01	2e-38	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	7e-26	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	Seita.6G160500.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]