PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G157300.1.p
Common NameLOC101766145, SETIT_013911mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 387aa    MW: 39796.1 Da    PI: 6.2581
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G157300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.24.1e-15150196354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r+h+e+ErrRR+riNs +++Lr+llP+      +K +Ka+ L +++e++k+L
  Seita.6G157300.1.p 150 RSHSEAERRRRQRINSHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 196
                         78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.288147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-13150199No hitNo description
PfamPF000101.7E-12150196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-14151204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-15151202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.81E-5249297No hitNo description
Gene3DG3DSA:3.30.70.2602.6E-6249298No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MWEAGGVHGS HEALLLQAAG SGAGADYGHA GPALLPWLGT AAAPGFSYMA PHHHHHQGPP  60
PFGAEAAPFG FGGGYGEGAG GVGPQLGVFG LEPPHLPAPP PHGLLAAAGG GAGVPQGSRM  120
VSGLLGTLQA ELGRMTAKEI MDAKALAASR SHSEAERRRR QRINSHLARL RSLLPNTTKT  180
DKASLLAEVI EHVKELKRQT SAVLGAAGEG EEEEASAAAR RNLLLPTESD ELAVDAGEDG  240
EGRLLVRASL CCEDRAGLIP DIARALAALR LRARRAEIAT LGGRVRNVLL ITTADDDDGG  300
EEEEGRQHDD VGGGHGGEDD DDAADGCGAR ASHHHRRHEL VASIQEALRG VMDRKTASSG  360
DTSSSSGGGG SIKRQRMSGA HEQGSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G157300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973505.20.0transcription factor bHLH30
TrEMBLK3YI420.0K3YI42_SETIT; Uncharacterized protein
STRINGSi013911m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-48bHLH family protein