PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G104100.1.p
Common NameSETIT_014969mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 276aa    MW: 28501.8 Da    PI: 8.1243
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G104100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000198120123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C + F ++  L  H++ H
  Seita.6G104100.1.p  98 FKCNYCQRKFYTSQALGGHQNAH 120
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.96E-795125No hitNo description
PROSITE profilePS5015711.57298125IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDKGSSSRTA SMEVEGTGLQ VVEEGEEVQV PDKEDEAPAK ELDLLGALGS EVPAPEMKVV  60
EAQAVAPGKG KEKAVVAEEE KAPATAMAST GGEKKRSFKC NYCQRKFYTS QALGGHQNAH  120
KRERSLAKRG AAAAGRGLYG GADPFLPPHH LRFPHAWPYP SGGGRLSSSF VGLGRGSAAA  180
APFYGGVHHG WAAHAQPSMA GLARHAGAER PVYAPHGTSS RAPSPAVLDS GMAGLRWAGV  240
ANGASAGGDN GVAREATTSQ QEEAQSCKID LNLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G104100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683031.11e-174zinc finger protein 3-like
TrEMBLA0A368RKG40.0A0A368RKG4_SETIT; Uncharacterized protein
STRINGSi014969m1e-173(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.13e-14zinc finger protein 4