PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.6G063700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 386aa MW: 41977.9 Da PI: 8.0467 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.7 | 0.00011 | 225 | 280 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHC..TSCCC.....TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLre..llPkas..kapskK.lsKaeiLekAveYIksLq 55 h+++Er RR++i +++ + ++ l+P + + + +Ka++L + ++Y+k Lq Seita.6G063700.1.p 225 HSIVERLRREKISDRMKNCKTlsLIPIRLqlQLKFLElADKASVLDEIIDYVKFLQ 280 99**************888761157763357444444489**************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1480 | 2.3E-13 | 11 | 55 | No hit | No description |
Pfam | PF05221 | 9.2E-12 | 13 | 55 | IPR000043 | Adenosylhomocysteinase |
SuperFamily | SSF52283 | 7.82E-14 | 13 | 55 | No hit | No description |
SuperFamily | SSF47459 | 1.96E-8 | 218 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.17E-6 | 218 | 284 | No hit | No description |
PROSITE profile | PS50888 | 11.877 | 220 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-9 | 222 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006730 | Biological Process | one-carbon metabolic process | ||||
GO:0004013 | Molecular Function | adenosylhomocysteinase activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MVLSVEKTSS GREYKVKDLS QADFGRLEIE LAEVEMPVLM ACRTEFGPSK PFAGAGQQEL 60 RPEGGPAADQ RDNAPSPPSP SASYKSGPRR LLLSLDENAA GPDGGNRRRE FLMNESKEFI 120 SCRLPSFANV HETSVVASGF KIHKQEQNPM CNVPIPTFTA RNQMTVTTTQ GAQIPQKMPS 180 WVNENKSECP VSRPPDVQNQ ANSAANGVSV KPRVRARRGQ ATDPHSIVER LRREKISDRM 240 KNCKTLSLIP IRLQLQLKFL ELADKASVLD EIIDYVKFLQ LQLKVLSMSR LGAPGAVLPL 300 LAESQTEGCH GQPLSAATNA QGLLDTQDSE DALAFEEEVV KLMETSITSA MQYLQNKGLC 360 LMPVALAPAI STQKGASGAA TPRER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ond_A | 3e-21 | 1 | 55 | 4 | 58 | Adenosylhomocysteinase |
3ond_B | 3e-21 | 1 | 55 | 4 | 58 | Adenosylhomocysteinase |
3one_A | 3e-21 | 1 | 55 | 4 | 58 | Adenosylhomocysteinase |
3one_B | 3e-21 | 1 | 55 | 4 | 58 | Adenosylhomocysteinase |
3onf_A | 3e-21 | 1 | 55 | 4 | 58 | Adenosylhomocysteinase |
3onf_B | 3e-21 | 1 | 55 | 4 | 58 | Adenosylhomocysteinase |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.6G063700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702221.1 | 0.0 | LOW QUALITY PROTEIN: transcription factor bHLH23-like | ||||
TrEMBL | A0A368RIM9 | 0.0 | A0A368RIM9_SETIT; Uncharacterized protein | ||||
STRING | Si006332m | 1e-170 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3254 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 3e-42 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.6G063700.1.p |