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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Seita.6G053600.1.p |
| Common Name | LOC101757085, SETIT_013969mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
C3H |
| Protein Properties |
Length: 365aa MW: 38209.1 Da PI: 7.4973 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.6G053600.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 31 | 4.3e-10 | 101 | 126 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC+ f++ GtC+y +C+FaHg+
Seita.6G053600.1.p 101 FKTKLCCKFRA-GTCPYVTNCNFAHGM 126
69*********.*************95 PP
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| 2 | zf-CCCH | 18.1 | 4.6e-06 | 179 | 204 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
yk + C+ f+ C+yGd C+F H+
Seita.6G053600.1.p 179 YKGRHCKKFYTEEGCPYGDACTFLHD 204
78888********************7 PP
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| 3 | zf-CCCH | 43.4 | 5.8e-14 | 243 | 268 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt++C+ + tG+C++G++C+FaHg
Seita.6G053600.1.p 243 WKTRICNKWEMTGYCPFGSKCHFAHG 268
8************************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 2.0E-14 | 98 | 133 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.79E-8 | 98 | 131 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.028 | 100 | 127 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0014 | 100 | 126 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.3E-7 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.1E-8 | 178 | 206 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.629 | 178 | 206 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.53E-7 | 178 | 206 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.3 | 178 | 205 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.2E-17 | 238 | 272 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.84E-10 | 239 | 273 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.1E-9 | 242 | 269 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.422 | 242 | 270 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.6E-11 | 243 | 268 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MDYTNAIHII PDAAGPDAWT NAAPSAAGGD SAIWATEDDY RQWSADPGYG DRNPSSRAGS 60
EQPPPGKKAR GGGGAGGGAG GGDGGGGSST SKSRAIGKMF FKTKLCCKFR AGTCPYVTNC 120
NFAHGMEELR KPPPNWQEIV AAHEEATEQR EEHQIPIMTS GSVVAGDGGG AGSQGGRAYK 180
GRHCKKFYTE EGCPYGDACT FLHDEQSKAR ESVAISLSPT VGGGGYNAAA AANGAMVQKP 240
SNWKTRICNK WEMTGYCPFG SKCHFAHGAA ELHKYGGGLV DIDGRDVAST PDSKQAGASA 300
KAPADSAAAS TAIPPHADVY HLGIQSQRST NLNQRSGQVQ RPIQKWKGPD KISRIYGDWI 360
DENE*
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