PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G443300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 526aa    MW: 55811.2 Da    PI: 8.2312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G443300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05111133123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Seita.5G443300.1.p 111 FVCEICHKGFQRDQNLQLHRRGH 133
                         89*******************88 PP
2zf-C2H212.40.00049196218123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC+ Cgk++  +s+ k H +++
  Seita.5G443300.1.p 196 WKCERCGKRYAVHSDWKAHAKVC 218
                         58*****************9987 PP
3zf-C2H212.30.00051226244523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                         dCg++Fsr++++++H   +
  Seita.5G443300.1.p 226 DCGTVFSRRDSFVTHRAFC 244
                         9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.0E-5110133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.2E-7110133No hitNo description
PROSITE profilePS5015710.637111133IPR007087Zinc finger, C2H2
SMARTSM003550.046111133IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SMARTSM00355190161191IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4184216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.2E-7191216No hitNo description
SMARTSM00355150196216IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MQVSCLPSMS GVAARECAGS FSSVSSNTAR EVEEEFLQHQ QQQFHTKPLV LGSPPEMGND  60
DGDLQRVTGP SELPPPAPPT VKKKRSLPGT PDPSAEVMAL SPRTLMATNR FVCEICHKGF  120
QRDQNLQLHR RGHNLPWKLR QRGGGDGAAA GGGGPPRKRV YVCPEASCVH HNPARALGDL  180
TGIKKHYCRK HGEKKWKCER CGKRYAVHSD WKAHAKVCGT REYKCDCGTV FSRRDSFVTH  240
RAFCDALAQE NNKLAQPMNM ATVASALQGH AHHLALPPSH ADDLDAAAED DADADFNLDT  300
KSPQLRLQPT TMSDAANTPF LPPPLSMAGC MLSSLAAARP APSPSTTFFS GAKIGIDGPS  360
GPTGTMGFSP AGSASMSATA LLQKAAEMGA TTSGGYGAGF PTTVGFGPML GGPDRFPSPF  420
GPLKAAMEPP YDGQPLLGQT QLVGLDVGRL LLPMPPGQQL YGGHGGGVGS MTRAIGSLMH  480
GGQQQQQMVE HRRPDDLRVV DYLGVDEQRS FSGVSSFGPH IGPWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33192259370Zinc finger protein JACKDAW
5b3h_F2e-33192259370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G443300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666520.0BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971187.30.0protein indeterminate-domain 2
SwissprotQ9SCQ61e-105IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A368RFM80.0A0A368RFM8_SETIT; Uncharacterized protein
STRINGSi001316m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-103C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]