PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G442400.1.p
Common NameLOC101773132, SETIT_000079mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HB-other
Protein Properties Length: 1227aa    MW: 134264 Da    PI: 8.4076
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G442400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.62.9e-0574130157
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         +r+R  ++++ ++ +++lF+ + ++ ++e +e++  +g+t +qV+ +F  ++ + +k
  Seita.5G442400.1.p  74 KRPRDLLNPKAVKCMQSLFALKDTIGKKETREISLLCGVTVTQVREFFTCQKSRVRK 130
                         799*********************************************999999886 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 1227 aa     Download sequence    Send to blast
MELVPFKPAA GALAEAGFGA GAGSIPAMVA AQQEMLHEQV DQLQRLVVAQ CRLTGVNPLA  60
QEMAAGALSI KIGKRPRDLL NPKAVKCMQS LFALKDTIGK KETREISLLC GVTVTQVREF  120
FTCQKSRVRK FVRLSQEKAL RVEAPKELDN AFSMSTEQIP LDIEAHAEVV EPLRTLEPVV  180
PRSSSQPMDV PQVSSQPMEL SQSCLQPMEA FQNSLQQATA QQYFAAPVMP SGTMVVQPTD  240
AKISPDSVRK EIKQEEVHPG VESEDKKFLE SIFALMRKEE TFSGQVKLME WILQINNVTV  300
LSWFVTMGGL TIMSTWLSLA ANEEQTSVIL VIFKVLLHLP LHKALPAHMS VVLQTINRLR  360
FYRTPDISSK ARNLLSRLSK VLVRSQALKK PQKDLICKQR ISEILRDESW KSEVDITEEV  420
LALTDGANES SKPEPRKTQM LLTASADETN KRSAMQTKSK QKRKVLLVEH PNKKAAVKNV  480
NSARNSTNNS RPLSADDIQK AKMRAMFMQE KYGKVDSSKA SDKSQAMETP KTSGLVNSNV  540
LPVPRDPIRS TAQPFDASTS STAQPVDPST STSKQSTVPQ PDKPEISNGL KLNIGSPKNV  600
VEKLDSKRVP WRIPPAVWID PSWSVSAGDN SKELEVQTQR NRREKETFYA SQKDIPLNPK  660
DPWDLEMDFD DSLTPEIPID QAPDADTMEM DSVGAAPNAA APVKDKQIGS TATSVAVADG  720
ANGEDPEPDL ELLTVLLKNP QLVFALTSNN GEDVSSEQTV ALLDTLKRTG LGLSELVNTL  780
GNGAGAPKEP EPEPIPASLP SPTPSDQTAR AVWGPEHPTQ ARAPNLQQPP LSNRGNTPPI  840
ANTVQQSFSN VMSSLPSQPY ASVSVLPAQI QANVPSLPQL AVSVNPPVQH VSPVNNHLSR  900
ASVHQHAQQY ALASDPVAMS LHQQAAVNKS THGLQSVPNP AVAHSSLPEP NASYTTLPWQ  960
SNAAHVTNTG RNATADPWAA RTTNSCNTAS ASTVPYANQN AYGDQSTHSA YNAYGSAAAS  1020
SRTVLTGHGL DRNGYSRPVV EYQAMARDSH QRHSRSPDPG AGRDYGGTQG YNQQPLTRWS  1080
AGQGQQSYNP EPSRQWRSAQ QGYTSAEPSR QWSSARQSYT SAEPSRQWSS EPKSYNVESS  1140
RSWNLGQQGQ NPEGSRQWNL GKQDAYNPSD GRRSYEPQSY NVESSRSWNS GQQGQNPEAS  1200
RQWNLGKQDA YNPSDGRRSY DQHWRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1763768DTLKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G442400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971183.10.0homeobox protein LUMINIDEPENDENS
TrEMBLK3XDW20.0K3XDW2_SETIT; Uncharacterized protein
STRINGSi000079m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80433034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.21e-125HB-other family protein