PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

SBP

Protein Properties

Length: 388aa MW: 40234.7 Da PI: 9.2107

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G432500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.3	3.8e-42	97	173	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C vegC+adls+ ++yhrrhkvCe+hsk+pvv+v+g++qrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ Seita.5G432500.1.p 97 CSVEGCAADLSKGRDYHRRHKVCEAHSKTPVVTVAGQQQRFCQQCSRFHSLGEFDDTKRSCRKRLDGHNRRRRKPQP 173 **************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.5E-34	89	158	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.898	94	171	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-39	95	176	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-31	97	170	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MDWDAKMLPA WDLGTVVGPS SGGGGGVVAA AGGGGGGGGA LDLKLGGPTS WRAASTTTAA 60 AAPLPSPPAP PPRASSSSSA PAKRARPGQA QQAVPACSVE GCAADLSKGR DYHRRHKVCE 120 AHSKTPVVTV AGQQQRFCQQ CSRFHSLGEF DDTKRSCRKR LDGHNRRRRK PQPDPLNPGG 180 LFANHHGVTR FAAYPQLFAS SLADPKWPVV KTEADVFQDQ YYPAVHLNGA GSLFHGKDRK 240 HFPFLTNHHH GGESAGAFGS QPFTITTASS ESCSKQSNGN CALSLLSDNP TPAQTAMIPT 300 AQPLGATLQY GGAARVPDGG DVSLAGMSYV RLGDSKQASI LTTSTSHTTV ASPGPATQLQ 360 YYYHVSGGDQ GNSPDGAAIQ AIPYSSW*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MDWDAKMLPA WDLGTVVGPS SGGGGGVVAA AGGGGGGGGA LDLKLGGPTS WRAASTTTAA  60
AAPLPSPPAP PPRASSSSSA PAKRARPGQA QQAVPACSVE GCAADLSKGR DYHRRHKVCE  120
AHSKTPVVTV AGQQQRFCQQ CSRFHSLGEF DDTKRSCRKR LDGHNRRRRK PQPDPLNPGG  180
LFANHHGVTR FAAYPQLFAS SLADPKWPVV KTEADVFQDQ YYPAVHLNGA GSLFHGKDRK  240
HFPFLTNHHH GGESAGAFGS QPFTITTASS ESCSKQSNGN CALSLLSDNP TPAQTAMIPT  300
AQPLGATLQY GGAARVPDGG DVSLAGMSYV RLGDSKQASI LTTSTSHTTV ASPGPATQLQ  360
YYYHVSGGDQ GNSPDGAAIQ AIPYSSW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-30	97	170	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	170	KRSCRKRLDGHNRRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G432500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK356077	1e-110	AK356077.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1029L02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971091.1	0.0	squamosa promoter-binding-like protein 2
Swissprot	Q0JGI1	1e-121	SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBL	K3XIT1	0.0	K3XIT1_SETIT; Uncharacterized protein
STRING	Si001804m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10456	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	4e-32	SBP family protein

Link Out ? help Back to Top
Phytozome	Seita.5G432500.1.p
Entrez Gene	101770983

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]