PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G427800.1.p
Common NameLOC101756518, SETIT_001558mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 426aa    MW: 46052 Da    PI: 8.7479
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G427800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.3e-106995127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C +++rtG C++G +C+F+H+p
  Seita.5G427800.1.p 69 PGEPDCTYYLRTGLCRFGMSCRFNHPP 95
                        5789*********************97 PP
2zf-CCCH38.12.6e-12116140327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++++tGtCk+G++CkF+H++
  Seita.5G427800.1.p 116 QPECQYYLKTGTCKFGPTCKFHHPR 140
                         799********************96 PP
3zf-CCCH31.62.8e-10162186327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C ++++tG+Cky ++CkF+H++
  Seita.5G427800.1.p 162 EKECAYYLKTGQCKYANTCKFHHPE 186
                         679********************96 PP
4zf-CCCH39.31.1e-12313338227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++++tG Ck+G+ CkF+H++
  Seita.5G427800.1.p 313 DQPECQYYMKTGDCKFGAVCKFHHPR 338
                         689*********************96 PP
5zf-CCCH42.61e-13358384127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++elC+f++r+G+Ck+G++CkF H++
  Seita.5G427800.1.p 358 PGEELCKFYSRYGICKFGANCKFDHPM 384
                         689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.9716896IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-56895IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-87095IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-57396IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-47494IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694113141IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6113140IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-10116140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6117142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-5119141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61159187IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4159186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5159186IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-7162186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4165185IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5311338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023311339IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9313338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5314338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4317337IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-8357384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.676357385IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6358384IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-11359384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5361382IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MDDAGRASAP AAVTVSATSA PALPPPSATT AAADTSSPDP SALYGEGMWQ QMAMNSGATM  60
QPGPYPERPG EPDCTYYLRT GLCRFGMSCR FNHPPDRNLA IASARMKGEY PERVGQPECQ  120
YYLKTGTCKF GPTCKFHHPR EKAGIAGRVQ LNTLGYPLRP NEKECAYYLK TGQCKYANTC  180
KFHHPELFNA VPSSRGSPIY PSVHSSASAG PQSYTGTMAS WAFPRASYIP SPRWQSPSNY  240
APMIVPQGLV QVPSWNSYPG QLQSPGAQQT YGTSQQGEPS AGNQGMLSPY RSSSFPVPQY  300
ALQRENVFPE RPDQPECQYY MKTGDCKFGA VCKFHHPRVR SLPPPDCVLS PMGLPIRPGE  360
ELCKFYSRYG ICKFGANCKF DHPMTAPMGV YAYGFSASAS PASASTNVPM ARRLLGSPSG  420
SGYAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G427800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369070.0BT036907.1 Zea mays full-length cDNA clone ZM_BFb0146O18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971057.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLK3XI360.0K3XI36_SETIT; Uncharacterized protein
STRINGSi001558m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-148zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]